Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24190

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS24180 and ABIE41_RS24185 are separated by 16 nucleotidesABIE41_RS24185 and ABIE41_RS24190 are separated by 158 nucleotidesABIE41_RS24190 and ABIE41_RS24195 are separated by 54 nucleotides ABIE41_RS24180: ABIE41_RS24180 - biotin-dependent carboxyltransferase family protein, at 4,994,913 to 4,995,935 _RS24180 ABIE41_RS24185: ABIE41_RS24185 - helix-turn-helix transcriptional regulator, at 4,995,952 to 4,996,563 _RS24185 ABIE41_RS24190: ABIE41_RS24190 - GntR family transcriptional regulator, at 4,996,722 to 4,997,504 _RS24190 ABIE41_RS24195: ABIE41_RS24195 - PfkB family carbohydrate kinase, at 4,997,559 to 4,998,506 _RS24195 Position (kb) 4996 4997 4998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4996.551 kb on - strandat 4996.656 kb on + strandat 4996.745 kb on - strandat 4996.745 kb on - strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.750 kb on + strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.751 kb on - strandat 4996.780 kb on + strandat 4996.780 kb on + strandat 4996.780 kb on + strandat 4996.781 kb on - strandat 4996.781 kb on - strandat 4996.781 kb on - strandat 4996.781 kb on - strandat 4996.781 kb on - strandat 4996.945 kb on + strand, within ABIE41_RS24190at 4996.946 kb on - strand, within ABIE41_RS24190at 4996.999 kb on + strand, within ABIE41_RS24190at 4997.000 kb on - strand, within ABIE41_RS24190at 4997.000 kb on - strand, within ABIE41_RS24190at 4997.000 kb on - strand, within ABIE41_RS24190at 4997.259 kb on + strand, within ABIE41_RS24190at 4997.284 kb on + strand, within ABIE41_RS24190at 4997.295 kb on + strand, within ABIE41_RS24190at 4997.413 kb on + strand, within ABIE41_RS24190at 4997.413 kb on + strand, within ABIE41_RS24190at 4997.413 kb on + strand, within ABIE41_RS24190at 4997.414 kb on - strand, within ABIE41_RS24190at 4997.414 kb on - strand, within ABIE41_RS24190

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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4,996,551 - +1.1
4,996,656 + +0.5
4,996,745 - -0.3
4,996,745 - -0.2
4,996,750 + +1.9
4,996,750 + -1.3
4,996,750 + +3.0
4,996,750 + +1.7
4,996,750 + +0.4
4,996,750 + -0.5
4,996,750 + -0.5
4,996,750 + -1.7
4,996,751 - -1.4
4,996,751 - +2.6
4,996,751 - +0.8
4,996,751 - -2.3
4,996,751 - -0.8
4,996,751 - +0.3
4,996,751 - -2.3
4,996,751 - +0.2
4,996,780 + -1.5
4,996,780 + +0.4
4,996,780 + +0.1
4,996,781 - +0.5
4,996,781 - -3.3
4,996,781 - +0.5
4,996,781 - +0.3
4,996,781 - -1.5
4,996,945 + ABIE41_RS24190 0.28 +0.7
4,996,946 - ABIE41_RS24190 0.29 -0.3
4,996,999 + ABIE41_RS24190 0.35 -1.2
4,997,000 - ABIE41_RS24190 0.36 -1.0
4,997,000 - ABIE41_RS24190 0.36 +1.9
4,997,000 - ABIE41_RS24190 0.36 -1.0
4,997,259 + ABIE41_RS24190 0.69 -2.6
4,997,284 + ABIE41_RS24190 0.72 +0.4
4,997,295 + ABIE41_RS24190 0.73 -1.7
4,997,413 + ABIE41_RS24190 0.88 -1.3
4,997,413 + ABIE41_RS24190 0.88 +0.5
4,997,413 + ABIE41_RS24190 0.88 -3.1
4,997,414 - ABIE41_RS24190 0.88 -1.9
4,997,414 - ABIE41_RS24190 0.88 -0.9

Or see this region's nucleotide sequence