Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24110

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS24105 and ABIE41_RS24110 are separated by 30 nucleotidesABIE41_RS24110 and ABIE41_RS24115 are separated by 15 nucleotides ABIE41_RS24105: ABIE41_RS24105 - methyltransferase domain-containing protein, at 4,977,394 to 4,978,410 _RS24105 ABIE41_RS24110: ABIE41_RS24110 - response regulator, at 4,978,441 to 4,978,839 _RS24110 ABIE41_RS24115: ABIE41_RS24115 - PAS domain-containing protein, at 4,978,855 to 4,979,886 _RS24115 Position (kb) 4978 4979Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4977.538 kb on + strand, within ABIE41_RS24105at 4977.538 kb on + strand, within ABIE41_RS24105at 4977.539 kb on - strand, within ABIE41_RS24105at 4977.565 kb on + strand, within ABIE41_RS24105at 4977.565 kb on + strand, within ABIE41_RS24105at 4977.566 kb on - strand, within ABIE41_RS24105at 4977.742 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.784 kb on + strand, within ABIE41_RS24105at 4977.785 kb on - strand, within ABIE41_RS24105at 4977.785 kb on - strand, within ABIE41_RS24105at 4977.785 kb on - strand, within ABIE41_RS24105at 4977.785 kb on - strand, within ABIE41_RS24105at 4977.785 kb on - strand, within ABIE41_RS24105at 4978.001 kb on - strand, within ABIE41_RS24105at 4978.001 kb on - strand, within ABIE41_RS24105at 4978.094 kb on - strand, within ABIE41_RS24105at 4978.094 kb on - strand, within ABIE41_RS24105at 4978.094 kb on - strand, within ABIE41_RS24105at 4978.408 kb on + strandat 4978.409 kb on - strandat 4978.409 kb on - strandat 4978.522 kb on + strand, within ABIE41_RS24110at 4978.522 kb on + strand, within ABIE41_RS24110at 4978.695 kb on + strand, within ABIE41_RS24110at 4978.696 kb on - strand, within ABIE41_RS24110at 4978.696 kb on - strand, within ABIE41_RS24110at 4978.696 kb on - strand, within ABIE41_RS24110at 4978.696 kb on - strand, within ABIE41_RS24110at 4978.777 kb on + strand, within ABIE41_RS24110at 4978.777 kb on + strand, within ABIE41_RS24110at 4978.778 kb on - strand, within ABIE41_RS24110at 4978.778 kb on - strand, within ABIE41_RS24110at 4978.778 kb on - strand, within ABIE41_RS24110at 4979.120 kb on + strand, within ABIE41_RS24115at 4979.120 kb on + strand, within ABIE41_RS24115at 4979.120 kb on + strand, within ABIE41_RS24115at 4979.121 kb on - strand, within ABIE41_RS24115at 4979.121 kb on - strand, within ABIE41_RS24115at 4979.441 kb on + strand, within ABIE41_RS24115at 4979.615 kb on + strand, within ABIE41_RS24115at 4979.627 kb on + strand, within ABIE41_RS24115at 4979.628 kb on - strand, within ABIE41_RS24115at 4979.628 kb on - strand, within ABIE41_RS24115at 4979.628 kb on - strand, within ABIE41_RS24115at 4979.751 kb on - strand, within ABIE41_RS24115at 4979.751 kb on - strand, within ABIE41_RS24115at 4979.765 kb on + strand, within ABIE41_RS24115at 4979.765 kb on + strand, within ABIE41_RS24115at 4979.765 kb on + strand, within ABIE41_RS24115at 4979.765 kb on + strand, within ABIE41_RS24115at 4979.765 kb on + strand, within ABIE41_RS24115at 4979.766 kb on - strand, within ABIE41_RS24115at 4979.766 kb on - strand, within ABIE41_RS24115at 4979.766 kb on - strand, within ABIE41_RS24115at 4979.766 kb on - strand, within ABIE41_RS24115at 4979.768 kb on + strand, within ABIE41_RS24115at 4979.768 kb on + strand, within ABIE41_RS24115

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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4,977,538 + ABIE41_RS24105 0.14 -3.5
4,977,538 + ABIE41_RS24105 0.14 -0.5
4,977,539 - ABIE41_RS24105 0.14 +1.8
4,977,565 + ABIE41_RS24105 0.17 -0.3
4,977,565 + ABIE41_RS24105 0.17 -2.0
4,977,566 - ABIE41_RS24105 0.17 -1.2
4,977,742 + ABIE41_RS24105 0.34 +0.1
4,977,784 + ABIE41_RS24105 0.38 +3.4
4,977,784 + ABIE41_RS24105 0.38 +0.7
4,977,784 + ABIE41_RS24105 0.38 +2.4
4,977,784 + ABIE41_RS24105 0.38 +2.3
4,977,784 + ABIE41_RS24105 0.38 -0.2
4,977,784 + ABIE41_RS24105 0.38 +0.9
4,977,784 + ABIE41_RS24105 0.38 +1.1
4,977,784 + ABIE41_RS24105 0.38 +0.5
4,977,785 - ABIE41_RS24105 0.38 -0.3
4,977,785 - ABIE41_RS24105 0.38 -0.0
4,977,785 - ABIE41_RS24105 0.38 -0.2
4,977,785 - ABIE41_RS24105 0.38 -0.1
4,977,785 - ABIE41_RS24105 0.38 +0.5
4,978,001 - ABIE41_RS24105 0.60 +2.2
4,978,001 - ABIE41_RS24105 0.60 -0.2
4,978,094 - ABIE41_RS24105 0.69 +0.7
4,978,094 - ABIE41_RS24105 0.69 -1.8
4,978,094 - ABIE41_RS24105 0.69 -0.1
4,978,408 + -1.6
4,978,409 - -2.2
4,978,409 - +0.9
4,978,522 + ABIE41_RS24110 0.20 +0.5
4,978,522 + ABIE41_RS24110 0.20 +1.0
4,978,695 + ABIE41_RS24110 0.64 -1.2
4,978,696 - ABIE41_RS24110 0.64 -0.5
4,978,696 - ABIE41_RS24110 0.64 +0.2
4,978,696 - ABIE41_RS24110 0.64 -0.3
4,978,696 - ABIE41_RS24110 0.64 -1.5
4,978,777 + ABIE41_RS24110 0.84 +0.2
4,978,777 + ABIE41_RS24110 0.84 +0.1
4,978,778 - ABIE41_RS24110 0.84 +0.7
4,978,778 - ABIE41_RS24110 0.84 +0.9
4,978,778 - ABIE41_RS24110 0.84 +0.9
4,979,120 + ABIE41_RS24115 0.26 +0.5
4,979,120 + ABIE41_RS24115 0.26 +3.4
4,979,120 + ABIE41_RS24115 0.26 +1.8
4,979,121 - ABIE41_RS24115 0.26 +0.3
4,979,121 - ABIE41_RS24115 0.26 +2.3
4,979,441 + ABIE41_RS24115 0.57 +0.6
4,979,615 + ABIE41_RS24115 0.74 +2.4
4,979,627 + ABIE41_RS24115 0.75 -0.2
4,979,628 - ABIE41_RS24115 0.75 -0.5
4,979,628 - ABIE41_RS24115 0.75 -2.6
4,979,628 - ABIE41_RS24115 0.75 +2.1
4,979,751 - ABIE41_RS24115 0.87 -0.2
4,979,751 - ABIE41_RS24115 0.87 -0.1
4,979,765 + ABIE41_RS24115 0.88 -0.8
4,979,765 + ABIE41_RS24115 0.88 +0.1
4,979,765 + ABIE41_RS24115 0.88 +0.1
4,979,765 + ABIE41_RS24115 0.88 -1.7
4,979,765 + ABIE41_RS24115 0.88 +1.2
4,979,766 - ABIE41_RS24115 0.88 +1.7
4,979,766 - ABIE41_RS24115 0.88 +0.8
4,979,766 - ABIE41_RS24115 0.88 +2.5
4,979,766 - ABIE41_RS24115 0.88 +1.9
4,979,768 + ABIE41_RS24115 0.88 -0.1
4,979,768 + ABIE41_RS24115 0.88 +0.1

Or see this region's nucleotide sequence