Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24105 and ABIE41_RS24110 are separated by 30 nucleotides ABIE41_RS24110 and ABIE41_RS24115 are separated by 15 nucleotides
ABIE41_RS24105: ABIE41_RS24105 - methyltransferase domain-containing protein, at 4,977,394 to 4,978,410
_RS24105
ABIE41_RS24110: ABIE41_RS24110 - response regulator, at 4,978,441 to 4,978,839
_RS24110
ABIE41_RS24115: ABIE41_RS24115 - PAS domain-containing protein, at 4,978,855 to 4,979,886
_RS24115
Position (kb)
4978
4979 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4977.538 kb on + strand, within ABIE41_RS24105 at 4977.538 kb on + strand, within ABIE41_RS24105 at 4977.539 kb on - strand, within ABIE41_RS24105 at 4977.565 kb on + strand, within ABIE41_RS24105 at 4977.565 kb on + strand, within ABIE41_RS24105 at 4977.566 kb on - strand, within ABIE41_RS24105 at 4977.742 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.784 kb on + strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4977.785 kb on - strand, within ABIE41_RS24105 at 4978.001 kb on - strand, within ABIE41_RS24105 at 4978.001 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105 at 4978.094 kb on - strand, within ABIE41_RS24105 at 4978.408 kb on + strand at 4978.409 kb on - strand at 4978.409 kb on - strand at 4978.522 kb on + strand, within ABIE41_RS24110 at 4978.522 kb on + strand, within ABIE41_RS24110 at 4978.695 kb on + strand, within ABIE41_RS24110 at 4978.696 kb on - strand, within ABIE41_RS24110 at 4978.696 kb on - strand, within ABIE41_RS24110 at 4978.696 kb on - strand, within ABIE41_RS24110 at 4978.696 kb on - strand, within ABIE41_RS24110 at 4978.777 kb on + strand, within ABIE41_RS24110 at 4978.777 kb on + strand, within ABIE41_RS24110 at 4978.778 kb on - strand, within ABIE41_RS24110 at 4978.778 kb on - strand, within ABIE41_RS24110 at 4978.778 kb on - strand, within ABIE41_RS24110 at 4979.120 kb on + strand, within ABIE41_RS24115 at 4979.120 kb on + strand, within ABIE41_RS24115 at 4979.120 kb on + strand, within ABIE41_RS24115 at 4979.121 kb on - strand, within ABIE41_RS24115 at 4979.121 kb on - strand, within ABIE41_RS24115 at 4979.441 kb on + strand, within ABIE41_RS24115 at 4979.615 kb on + strand, within ABIE41_RS24115 at 4979.627 kb on + strand, within ABIE41_RS24115 at 4979.628 kb on - strand, within ABIE41_RS24115 at 4979.628 kb on - strand, within ABIE41_RS24115 at 4979.628 kb on - strand, within ABIE41_RS24115 at 4979.751 kb on - strand, within ABIE41_RS24115 at 4979.751 kb on - strand, within ABIE41_RS24115 at 4979.765 kb on + strand, within ABIE41_RS24115 at 4979.765 kb on + strand, within ABIE41_RS24115 at 4979.765 kb on + strand, within ABIE41_RS24115 at 4979.765 kb on + strand, within ABIE41_RS24115 at 4979.765 kb on + strand, within ABIE41_RS24115 at 4979.766 kb on - strand, within ABIE41_RS24115 at 4979.766 kb on - strand, within ABIE41_RS24115 at 4979.766 kb on - strand, within ABIE41_RS24115 at 4979.766 kb on - strand, within ABIE41_RS24115 at 4979.768 kb on + strand, within ABIE41_RS24115 at 4979.768 kb on + strand, within ABIE41_RS24115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 4,977,538 + ABIE41_RS24105 0.14 -3.5 4,977,538 + ABIE41_RS24105 0.14 -0.5 4,977,539 - ABIE41_RS24105 0.14 +1.8 4,977,565 + ABIE41_RS24105 0.17 -0.3 4,977,565 + ABIE41_RS24105 0.17 -2.0 4,977,566 - ABIE41_RS24105 0.17 -1.2 4,977,742 + ABIE41_RS24105 0.34 +0.1 4,977,784 + ABIE41_RS24105 0.38 +3.4 4,977,784 + ABIE41_RS24105 0.38 +0.7 4,977,784 + ABIE41_RS24105 0.38 +2.4 4,977,784 + ABIE41_RS24105 0.38 +2.3 4,977,784 + ABIE41_RS24105 0.38 -0.2 4,977,784 + ABIE41_RS24105 0.38 +0.9 4,977,784 + ABIE41_RS24105 0.38 +1.1 4,977,784 + ABIE41_RS24105 0.38 +0.5 4,977,785 - ABIE41_RS24105 0.38 -0.3 4,977,785 - ABIE41_RS24105 0.38 -0.0 4,977,785 - ABIE41_RS24105 0.38 -0.2 4,977,785 - ABIE41_RS24105 0.38 -0.1 4,977,785 - ABIE41_RS24105 0.38 +0.5 4,978,001 - ABIE41_RS24105 0.60 +2.2 4,978,001 - ABIE41_RS24105 0.60 -0.2 4,978,094 - ABIE41_RS24105 0.69 +0.7 4,978,094 - ABIE41_RS24105 0.69 -1.8 4,978,094 - ABIE41_RS24105 0.69 -0.1 4,978,408 + -1.6 4,978,409 - -2.2 4,978,409 - +0.9 4,978,522 + ABIE41_RS24110 0.20 +0.5 4,978,522 + ABIE41_RS24110 0.20 +1.0 4,978,695 + ABIE41_RS24110 0.64 -1.2 4,978,696 - ABIE41_RS24110 0.64 -0.5 4,978,696 - ABIE41_RS24110 0.64 +0.2 4,978,696 - ABIE41_RS24110 0.64 -0.3 4,978,696 - ABIE41_RS24110 0.64 -1.5 4,978,777 + ABIE41_RS24110 0.84 +0.2 4,978,777 + ABIE41_RS24110 0.84 +0.1 4,978,778 - ABIE41_RS24110 0.84 +0.7 4,978,778 - ABIE41_RS24110 0.84 +0.9 4,978,778 - ABIE41_RS24110 0.84 +0.9 4,979,120 + ABIE41_RS24115 0.26 +0.5 4,979,120 + ABIE41_RS24115 0.26 +3.4 4,979,120 + ABIE41_RS24115 0.26 +1.8 4,979,121 - ABIE41_RS24115 0.26 +0.3 4,979,121 - ABIE41_RS24115 0.26 +2.3 4,979,441 + ABIE41_RS24115 0.57 +0.6 4,979,615 + ABIE41_RS24115 0.74 +2.4 4,979,627 + ABIE41_RS24115 0.75 -0.2 4,979,628 - ABIE41_RS24115 0.75 -0.5 4,979,628 - ABIE41_RS24115 0.75 -2.6 4,979,628 - ABIE41_RS24115 0.75 +2.1 4,979,751 - ABIE41_RS24115 0.87 -0.2 4,979,751 - ABIE41_RS24115 0.87 -0.1 4,979,765 + ABIE41_RS24115 0.88 -0.8 4,979,765 + ABIE41_RS24115 0.88 +0.1 4,979,765 + ABIE41_RS24115 0.88 +0.1 4,979,765 + ABIE41_RS24115 0.88 -1.7 4,979,765 + ABIE41_RS24115 0.88 +1.2 4,979,766 - ABIE41_RS24115 0.88 +1.7 4,979,766 - ABIE41_RS24115 0.88 +0.8 4,979,766 - ABIE41_RS24115 0.88 +2.5 4,979,766 - ABIE41_RS24115 0.88 +1.9 4,979,768 + ABIE41_RS24115 0.88 -0.1 4,979,768 + ABIE41_RS24115 0.88 +0.1
Or see this region's nucleotide sequence