Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23220

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23215 and ABIE41_RS23220 are separated by 83 nucleotidesABIE41_RS23220 and ABIE41_RS23225 are separated by 936 nucleotides ABIE41_RS23215: ABIE41_RS23215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 4,776,020 to 4,776,586 _RS23215 ABIE41_RS23220: ABIE41_RS23220 - DMT family transporter, at 4,776,670 to 4,777,563 _RS23220 ABIE41_RS23225: ABIE41_RS23225 - DUF2019 domain-containing protein, at 4,778,500 to 4,778,874 _RS23225 Position (kb) 4776 4777 4778Strain fitness (log2 ratio) -2 -1 0 1 2at 4775.680 kb on + strandat 4775.797 kb on + strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.854 kb on - strandat 4775.854 kb on - strandat 4776.143 kb on + strand, within ABIE41_RS23215at 4776.143 kb on + strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.542 kb on + strandat 4776.660 kb on + strandat 4776.660 kb on + strandat 4776.660 kb on + strandat 4776.661 kb on - strandat 4776.661 kb on - strandat 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.623 kb on - strandat 4777.702 kb on + strandat 4777.703 kb on - strandat 4777.703 kb on - strandat 4777.796 kb on + strandat 4777.796 kb on + strandat 4777.797 kb on - strandat 4777.797 kb on - strandat 4777.868 kb on + strandat 4777.880 kb on + strandat 4777.881 kb on - strandat 4777.940 kb on - strandat 4778.020 kb on + strandat 4778.020 kb on + strandat 4778.020 kb on + strandat 4778.020 kb on + strandat 4778.021 kb on - strandat 4778.021 kb on - strandat 4778.021 kb on - strandat 4778.021 kb on - strandat 4778.073 kb on + strandat 4778.073 kb on + strandat 4778.074 kb on - strandat 4778.074 kb on - strandat 4778.141 kb on - strandat 4778.164 kb on + strandat 4778.165 kb on - strandat 4778.255 kb on + strandat 4778.255 kb on + strandat 4778.354 kb on + strandat 4778.371 kb on + strandat 4778.371 kb on + strandat 4778.372 kb on - strandat 4778.382 kb on - strandat 4778.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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4,775,680 + -0.5
4,775,797 + -0.4
4,775,798 - +0.8
4,775,798 - -0.6
4,775,798 - +2.1
4,775,798 - +1.2
4,775,798 - -0.4
4,775,854 - -0.0
4,775,854 - +1.9
4,776,143 + ABIE41_RS23215 0.22 +1.1
4,776,143 + ABIE41_RS23215 0.22 +0.4
4,776,144 - ABIE41_RS23215 0.22 -0.0
4,776,144 - ABIE41_RS23215 0.22 -0.5
4,776,144 - ABIE41_RS23215 0.22 +0.5
4,776,144 - ABIE41_RS23215 0.22 +0.4
4,776,542 + -0.9
4,776,660 + +1.2
4,776,660 + -0.3
4,776,660 + -0.2
4,776,661 - -0.7
4,776,661 - +1.6
4,777,357 + ABIE41_RS23220 0.77 -0.8
4,777,357 + ABIE41_RS23220 0.77 -0.9
4,777,357 + ABIE41_RS23220 0.77 -0.4
4,777,357 + ABIE41_RS23220 0.77 +0.1
4,777,358 - ABIE41_RS23220 0.77 -0.2
4,777,358 - ABIE41_RS23220 0.77 -1.1
4,777,358 - ABIE41_RS23220 0.77 -2.4
4,777,358 - ABIE41_RS23220 0.77 -0.9
4,777,623 - +0.7
4,777,702 + +1.9
4,777,703 - +0.1
4,777,703 - -0.5
4,777,796 + +1.0
4,777,796 + +1.1
4,777,797 - +1.1
4,777,797 - -0.5
4,777,868 + -1.0
4,777,880 + +0.5
4,777,881 - +0.3
4,777,940 - +0.6
4,778,020 + -0.7
4,778,020 + +0.5
4,778,020 + +0.5
4,778,020 + +0.6
4,778,021 - +1.8
4,778,021 - +1.1
4,778,021 - +1.0
4,778,021 - -1.2
4,778,073 + +0.1
4,778,073 + -2.5
4,778,074 - +1.2
4,778,074 - -0.8
4,778,141 - +1.0
4,778,164 + +1.1
4,778,165 - -2.5
4,778,255 + -0.1
4,778,255 + +0.8
4,778,354 + +1.7
4,778,371 + -0.2
4,778,371 + -0.1
4,778,372 - +0.6
4,778,382 - -0.5
4,778,426 + +0.3

Or see this region's nucleotide sequence