Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23215 and ABIE41_RS23220 are separated by 83 nucleotides ABIE41_RS23220 and ABIE41_RS23225 are separated by 936 nucleotides
ABIE41_RS23215: ABIE41_RS23215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 4,776,020 to 4,776,586
_RS23215
ABIE41_RS23220: ABIE41_RS23220 - DMT family transporter, at 4,776,670 to 4,777,563
_RS23220
ABIE41_RS23225: ABIE41_RS23225 - DUF2019 domain-containing protein, at 4,778,500 to 4,778,874
_RS23225
Position (kb)
4776
4777
4778 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4775.680 kb on + strand at 4775.797 kb on + strand at 4775.798 kb on - strand at 4775.798 kb on - strand at 4775.798 kb on - strand at 4775.798 kb on - strand at 4775.798 kb on - strand at 4775.854 kb on - strand at 4775.854 kb on - strand at 4776.143 kb on + strand, within ABIE41_RS23215 at 4776.143 kb on + strand, within ABIE41_RS23215 at 4776.144 kb on - strand, within ABIE41_RS23215 at 4776.144 kb on - strand, within ABIE41_RS23215 at 4776.144 kb on - strand, within ABIE41_RS23215 at 4776.144 kb on - strand, within ABIE41_RS23215 at 4776.542 kb on + strand at 4776.660 kb on + strand at 4776.660 kb on + strand at 4776.660 kb on + strand at 4776.661 kb on - strand at 4776.661 kb on - strand at 4777.357 kb on + strand, within ABIE41_RS23220 at 4777.357 kb on + strand, within ABIE41_RS23220 at 4777.357 kb on + strand, within ABIE41_RS23220 at 4777.357 kb on + strand, within ABIE41_RS23220 at 4777.358 kb on - strand, within ABIE41_RS23220 at 4777.358 kb on - strand, within ABIE41_RS23220 at 4777.358 kb on - strand, within ABIE41_RS23220 at 4777.358 kb on - strand, within ABIE41_RS23220 at 4777.623 kb on - strand at 4777.702 kb on + strand at 4777.703 kb on - strand at 4777.703 kb on - strand at 4777.796 kb on + strand at 4777.796 kb on + strand at 4777.797 kb on - strand at 4777.797 kb on - strand at 4777.868 kb on + strand at 4777.880 kb on + strand at 4777.881 kb on - strand at 4777.940 kb on - strand at 4778.020 kb on + strand at 4778.020 kb on + strand at 4778.020 kb on + strand at 4778.020 kb on + strand at 4778.021 kb on - strand at 4778.021 kb on - strand at 4778.021 kb on - strand at 4778.021 kb on - strand at 4778.073 kb on + strand at 4778.073 kb on + strand at 4778.074 kb on - strand at 4778.074 kb on - strand at 4778.141 kb on - strand at 4778.164 kb on + strand at 4778.165 kb on - strand at 4778.255 kb on + strand at 4778.255 kb on + strand at 4778.354 kb on + strand at 4778.371 kb on + strand at 4778.371 kb on + strand at 4778.372 kb on - strand at 4778.382 kb on - strand at 4778.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 4,775,680 + -0.5 4,775,797 + -0.4 4,775,798 - +0.8 4,775,798 - -0.6 4,775,798 - +2.1 4,775,798 - +1.2 4,775,798 - -0.4 4,775,854 - -0.0 4,775,854 - +1.9 4,776,143 + ABIE41_RS23215 0.22 +1.1 4,776,143 + ABIE41_RS23215 0.22 +0.4 4,776,144 - ABIE41_RS23215 0.22 -0.0 4,776,144 - ABIE41_RS23215 0.22 -0.5 4,776,144 - ABIE41_RS23215 0.22 +0.5 4,776,144 - ABIE41_RS23215 0.22 +0.4 4,776,542 + -0.9 4,776,660 + +1.2 4,776,660 + -0.3 4,776,660 + -0.2 4,776,661 - -0.7 4,776,661 - +1.6 4,777,357 + ABIE41_RS23220 0.77 -0.8 4,777,357 + ABIE41_RS23220 0.77 -0.9 4,777,357 + ABIE41_RS23220 0.77 -0.4 4,777,357 + ABIE41_RS23220 0.77 +0.1 4,777,358 - ABIE41_RS23220 0.77 -0.2 4,777,358 - ABIE41_RS23220 0.77 -1.1 4,777,358 - ABIE41_RS23220 0.77 -2.4 4,777,358 - ABIE41_RS23220 0.77 -0.9 4,777,623 - +0.7 4,777,702 + +1.9 4,777,703 - +0.1 4,777,703 - -0.5 4,777,796 + +1.0 4,777,796 + +1.1 4,777,797 - +1.1 4,777,797 - -0.5 4,777,868 + -1.0 4,777,880 + +0.5 4,777,881 - +0.3 4,777,940 - +0.6 4,778,020 + -0.7 4,778,020 + +0.5 4,778,020 + +0.5 4,778,020 + +0.6 4,778,021 - +1.8 4,778,021 - +1.1 4,778,021 - +1.0 4,778,021 - -1.2 4,778,073 + +0.1 4,778,073 + -2.5 4,778,074 - +1.2 4,778,074 - -0.8 4,778,141 - +1.0 4,778,164 + +1.1 4,778,165 - -2.5 4,778,255 + -0.1 4,778,255 + +0.8 4,778,354 + +1.7 4,778,371 + -0.2 4,778,371 + -0.1 4,778,372 - +0.6 4,778,382 - -0.5 4,778,426 + +0.3
Or see this region's nucleotide sequence