Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22955 and ABIE41_RS22960 overlap by 4 nucleotides ABIE41_RS22960 and ABIE41_RS22965 overlap by 1 nucleotides ABIE41_RS22965 and ABIE41_RS22970 are separated by 49 nucleotides ABIE41_RS22970 and ABIE41_RS22975 are separated by 66 nucleotides
ABIE41_RS22955: ABIE41_RS22955 - heme o synthase, at 4,728,111 to 4,729,058
_RS22955
ABIE41_RS22960: ABIE41_RS22960 - hypothetical protein, at 4,729,055 to 4,729,225
_RS22960
ABIE41_RS22965: ABIE41_RS22965 - cytochrome c oxidase assembly protein, at 4,729,225 to 4,729,839
_RS22965
ABIE41_RS22970: ABIE41_RS22970 - cytochrome c oxidase subunit 3, at 4,729,889 to 4,730,746
_RS22970
ABIE41_RS22975: ABIE41_RS22975 - DUF983 domain-containing protein, at 4,730,813 to 4,731,187
_RS22975
Position (kb) 4729
4730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4728.517 kb on - strand, within ABIE41_RS22955 at 4728.517 kb on - strand, within ABIE41_RS22955 at 4728.564 kb on - strand, within ABIE41_RS22955 at 4728.664 kb on + strand, within ABIE41_RS22955 at 4728.721 kb on - strand, within ABIE41_RS22955 at 4728.792 kb on + strand, within ABIE41_RS22955 at 4728.978 kb on + strand at 4729.528 kb on + strand, within ABIE41_RS22965 at 4729.576 kb on + strand, within ABIE41_RS22965 at 4729.577 kb on - strand, within ABIE41_RS22965 at 4729.687 kb on + strand, within ABIE41_RS22965 at 4729.687 kb on + strand, within ABIE41_RS22965 at 4729.687 kb on + strand, within ABIE41_RS22965 at 4729.687 kb on + strand, within ABIE41_RS22965 at 4729.688 kb on - strand, within ABIE41_RS22965 at 4729.688 kb on - strand, within ABIE41_RS22965 at 4729.688 kb on - strand, within ABIE41_RS22965 at 4729.688 kb on - strand, within ABIE41_RS22965 at 4729.688 kb on - strand, within ABIE41_RS22965 at 4729.689 kb on + strand, within ABIE41_RS22965 at 4729.710 kb on + strand, within ABIE41_RS22965 at 4729.750 kb on + strand, within ABIE41_RS22965 at 4729.750 kb on + strand, within ABIE41_RS22965 at 4729.751 kb on - strand, within ABIE41_RS22965 at 4729.756 kb on + strand, within ABIE41_RS22965 at 4729.756 kb on + strand, within ABIE41_RS22965 at 4729.838 kb on - strand at 4729.886 kb on + strand at 4729.887 kb on - strand at 4729.919 kb on + strand at 4729.920 kb on - strand at 4730.072 kb on + strand, within ABIE41_RS22970 at 4730.073 kb on - strand, within ABIE41_RS22970 at 4730.159 kb on + strand, within ABIE41_RS22970 at 4730.170 kb on - strand, within ABIE41_RS22970 at 4730.170 kb on - strand, within ABIE41_RS22970 at 4730.170 kb on - strand, within ABIE41_RS22970 at 4730.259 kb on - strand, within ABIE41_RS22970 at 4730.259 kb on - strand, within ABIE41_RS22970 at 4730.478 kb on - strand, within ABIE41_RS22970 at 4730.519 kb on + strand, within ABIE41_RS22970 at 4730.520 kb on - strand, within ABIE41_RS22970 at 4730.520 kb on - strand, within ABIE41_RS22970 at 4730.609 kb on + strand, within ABIE41_RS22970 at 4730.663 kb on + strand at 4730.664 kb on - strand at 4730.664 kb on - strand at 4730.664 kb on - strand at 4730.711 kb on + strand at 4730.711 kb on + strand at 4730.711 kb on + strand at 4730.712 kb on - strand at 4730.712 kb on - strand at 4730.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 4,728,517 - ABIE41_RS22955 0.43 -1.7 4,728,517 - ABIE41_RS22955 0.43 -0.9 4,728,564 - ABIE41_RS22955 0.48 -2.1 4,728,664 + ABIE41_RS22955 0.58 -0.9 4,728,721 - ABIE41_RS22955 0.64 -0.9 4,728,792 + ABIE41_RS22955 0.72 -0.5 4,728,978 + -2.1 4,729,528 + ABIE41_RS22965 0.49 -1.9 4,729,576 + ABIE41_RS22965 0.57 -1.9 4,729,577 - ABIE41_RS22965 0.57 -0.5 4,729,687 + ABIE41_RS22965 0.75 -2.4 4,729,687 + ABIE41_RS22965 0.75 -1.2 4,729,687 + ABIE41_RS22965 0.75 -0.9 4,729,687 + ABIE41_RS22965 0.75 -0.9 4,729,688 - ABIE41_RS22965 0.75 -0.9 4,729,688 - ABIE41_RS22965 0.75 -1.1 4,729,688 - ABIE41_RS22965 0.75 -0.8 4,729,688 - ABIE41_RS22965 0.75 -1.6 4,729,688 - ABIE41_RS22965 0.75 -0.5 4,729,689 + ABIE41_RS22965 0.75 -1.0 4,729,710 + ABIE41_RS22965 0.79 -2.1 4,729,750 + ABIE41_RS22965 0.85 -0.4 4,729,750 + ABIE41_RS22965 0.85 -1.6 4,729,751 - ABIE41_RS22965 0.86 -2.2 4,729,756 + ABIE41_RS22965 0.86 +0.0 4,729,756 + ABIE41_RS22965 0.86 -2.2 4,729,838 - -1.4 4,729,886 + -0.9 4,729,887 - +1.1 4,729,919 + -0.5 4,729,920 - -3.6 4,730,072 + ABIE41_RS22970 0.21 -1.8 4,730,073 - ABIE41_RS22970 0.21 -3.6 4,730,159 + ABIE41_RS22970 0.31 -0.5 4,730,170 - ABIE41_RS22970 0.33 -1.2 4,730,170 - ABIE41_RS22970 0.33 +0.5 4,730,170 - ABIE41_RS22970 0.33 -3.6 4,730,259 - ABIE41_RS22970 0.43 -1.5 4,730,259 - ABIE41_RS22970 0.43 -1.3 4,730,478 - ABIE41_RS22970 0.69 -0.7 4,730,519 + ABIE41_RS22970 0.73 -1.1 4,730,520 - ABIE41_RS22970 0.74 -1.1 4,730,520 - ABIE41_RS22970 0.74 -1.8 4,730,609 + ABIE41_RS22970 0.84 +2.1 4,730,663 + -2.8 4,730,664 - +1.1 4,730,664 - -2.4 4,730,664 - -2.3 4,730,711 + -0.1 4,730,711 + +0.6 4,730,711 + +0.2 4,730,712 - -1.2 4,730,712 - -3.7 4,730,712 - -1.9
Or see this region's nucleotide sequence