Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16100

Experiment: R2A with 3-octanone 5.31033333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS16090 and ABIE41_RS16095 overlap by 4 nucleotidesABIE41_RS16095 and ABIE41_RS16100 are separated by 42 nucleotidesABIE41_RS16100 and ABIE41_RS16105 are separated by 17 nucleotidesABIE41_RS16105 and ABIE41_RS16110 are separated by 5 nucleotides ABIE41_RS16090: ABIE41_RS16090 - acyltransferase, at 3,295,116 to 3,296,171 _RS16090 ABIE41_RS16095: ABIE41_RS16095 - glycosyltransferase family 2 protein, at 3,296,168 to 3,297,052 _RS16095 ABIE41_RS16100: ABIE41_RS16100 - hypothetical protein, at 3,297,095 to 3,297,394 _RS16100 ABIE41_RS16105: ABIE41_RS16105 - hypothetical protein, at 3,297,412 to 3,297,783 _RS16105 ABIE41_RS16110: ABIE41_RS16110 - aspartate--tRNA ligase, at 3,297,789 to 3,299,567 _RS16110 Position (kb) 3297 3298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3296.286 kb on + strand, within ABIE41_RS16095at 3296.361 kb on + strand, within ABIE41_RS16095at 3296.859 kb on + strand, within ABIE41_RS16095at 3296.860 kb on - strand, within ABIE41_RS16095at 3297.171 kb on + strand, within ABIE41_RS16100at 3297.172 kb on - strand, within ABIE41_RS16100at 3297.276 kb on + strand, within ABIE41_RS16100at 3297.276 kb on + strand, within ABIE41_RS16100at 3297.277 kb on - strand, within ABIE41_RS16100at 3297.335 kb on - strand, within ABIE41_RS16100at 3297.374 kb on + strandat 3297.374 kb on + strandat 3297.539 kb on + strand, within ABIE41_RS16105at 3297.539 kb on + strand, within ABIE41_RS16105at 3297.539 kb on + strand, within ABIE41_RS16105at 3297.539 kb on + strand, within ABIE41_RS16105at 3297.539 kb on + strand, within ABIE41_RS16105at 3297.540 kb on - strand, within ABIE41_RS16105at 3297.540 kb on - strand, within ABIE41_RS16105at 3297.540 kb on - strand, within ABIE41_RS16105at 3297.540 kb on - strand, within ABIE41_RS16105at 3297.540 kb on - strand, within ABIE41_RS16105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
remove
3,296,286 + ABIE41_RS16095 0.13 -3.0
3,296,361 + ABIE41_RS16095 0.22 -0.6
3,296,859 + ABIE41_RS16095 0.78 -1.5
3,296,860 - ABIE41_RS16095 0.78 -1.3
3,297,171 + ABIE41_RS16100 0.25 -0.6
3,297,172 - ABIE41_RS16100 0.26 -0.7
3,297,276 + ABIE41_RS16100 0.60 -0.0
3,297,276 + ABIE41_RS16100 0.60 -2.7
3,297,277 - ABIE41_RS16100 0.61 +0.4
3,297,335 - ABIE41_RS16100 0.80 -2.3
3,297,374 + +0.4
3,297,374 + +0.7
3,297,539 + ABIE41_RS16105 0.34 -0.9
3,297,539 + ABIE41_RS16105 0.34 -2.1
3,297,539 + ABIE41_RS16105 0.34 +0.7
3,297,539 + ABIE41_RS16105 0.34 -1.6
3,297,539 + ABIE41_RS16105 0.34 +0.5
3,297,540 - ABIE41_RS16105 0.34 -0.1
3,297,540 - ABIE41_RS16105 0.34 +0.0
3,297,540 - ABIE41_RS16105 0.34 -0.6
3,297,540 - ABIE41_RS16105 0.34 -2.5
3,297,540 - ABIE41_RS16105 0.34 +1.9

Or see this region's nucleotide sequence