Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11830

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11825 and ABIE41_RS11830 overlap by 52 nucleotidesABIE41_RS11830 and ABIE41_RS11835 are separated by 60 nucleotidesABIE41_RS11835 and ABIE41_RS11840 are separated by 66 nucleotidesABIE41_RS11840 and ABIE41_RS11845 are separated by 127 nucleotides ABIE41_RS11825: ABIE41_RS11825 - Gfo/Idh/MocA family oxidoreductase, at 2,418,905 to 2,419,894 _RS11825 ABIE41_RS11830: ABIE41_RS11830 - class I SAM-dependent methyltransferase, at 2,419,843 to 2,420,685 _RS11830 ABIE41_RS11835: ABIE41_RS11835 - DMT family protein, at 2,420,746 to 2,421,102 _RS11835 ABIE41_RS11840: ABIE41_RS11840 - SemiSWEET transporter, at 2,421,169 to 2,421,429 _RS11840 ABIE41_RS11845: ABIE41_RS11845 - lytic murein transglycosylase, at 2,421,557 to 2,422,741 _RS11845 Position (kb) 2419 2420 2421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2418.866 kb on + strandat 2419.118 kb on + strand, within ABIE41_RS11825at 2419.118 kb on + strand, within ABIE41_RS11825at 2419.119 kb on - strand, within ABIE41_RS11825at 2419.252 kb on + strand, within ABIE41_RS11825at 2419.252 kb on + strand, within ABIE41_RS11825at 2419.252 kb on + strand, within ABIE41_RS11825at 2419.893 kb on - strandat 2420.024 kb on + strand, within ABIE41_RS11830at 2420.025 kb on - strand, within ABIE41_RS11830at 2420.129 kb on + strand, within ABIE41_RS11830at 2420.130 kb on - strand, within ABIE41_RS11830at 2420.281 kb on + strand, within ABIE41_RS11830at 2420.281 kb on + strand, within ABIE41_RS11830at 2420.282 kb on - strand, within ABIE41_RS11830at 2420.433 kb on + strand, within ABIE41_RS11830at 2420.434 kb on - strand, within ABIE41_RS11830at 2420.612 kb on + strandat 2420.679 kb on + strandat 2420.679 kb on + strandat 2420.680 kb on - strandat 2420.948 kb on + strand, within ABIE41_RS11835at 2420.949 kb on - strand, within ABIE41_RS11835at 2421.008 kb on + strand, within ABIE41_RS11835at 2421.008 kb on + strand, within ABIE41_RS11835at 2421.008 kb on + strand, within ABIE41_RS11835at 2421.256 kb on - strand, within ABIE41_RS11840at 2421.256 kb on - strand, within ABIE41_RS11840at 2421.267 kb on - strand, within ABIE41_RS11840at 2421.522 kb on + strandat 2421.522 kb on + strandat 2421.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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2,418,866 + +0.3
2,419,118 + ABIE41_RS11825 0.22 -0.0
2,419,118 + ABIE41_RS11825 0.22 -0.1
2,419,119 - ABIE41_RS11825 0.22 +0.6
2,419,252 + ABIE41_RS11825 0.35 -1.1
2,419,252 + ABIE41_RS11825 0.35 -0.5
2,419,252 + ABIE41_RS11825 0.35 -0.1
2,419,893 - -0.6
2,420,024 + ABIE41_RS11830 0.21 +0.0
2,420,025 - ABIE41_RS11830 0.22 -1.6
2,420,129 + ABIE41_RS11830 0.34 -1.8
2,420,130 - ABIE41_RS11830 0.34 -0.3
2,420,281 + ABIE41_RS11830 0.52 -4.6
2,420,281 + ABIE41_RS11830 0.52 +0.2
2,420,282 - ABIE41_RS11830 0.52 -1.9
2,420,433 + ABIE41_RS11830 0.70 -1.0
2,420,434 - ABIE41_RS11830 0.70 +3.0
2,420,612 + +0.8
2,420,679 + -1.4
2,420,679 + +0.6
2,420,680 - -0.1
2,420,948 + ABIE41_RS11835 0.57 +0.9
2,420,949 - ABIE41_RS11835 0.57 -0.1
2,421,008 + ABIE41_RS11835 0.73 -3.6
2,421,008 + ABIE41_RS11835 0.73 -1.2
2,421,008 + ABIE41_RS11835 0.73 +0.7
2,421,256 - ABIE41_RS11840 0.33 -0.8
2,421,256 - ABIE41_RS11840 0.33 -0.6
2,421,267 - ABIE41_RS11840 0.38 -1.0
2,421,522 + -1.5
2,421,522 + -0.6
2,421,523 - -1.5

Or see this region's nucleotide sequence