Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11825 and ABIE41_RS11830 overlap by 52 nucleotides ABIE41_RS11830 and ABIE41_RS11835 are separated by 60 nucleotides ABIE41_RS11835 and ABIE41_RS11840 are separated by 66 nucleotides ABIE41_RS11840 and ABIE41_RS11845 are separated by 127 nucleotides
ABIE41_RS11825: ABIE41_RS11825 - Gfo/Idh/MocA family oxidoreductase, at 2,418,905 to 2,419,894
_RS11825
ABIE41_RS11830: ABIE41_RS11830 - class I SAM-dependent methyltransferase, at 2,419,843 to 2,420,685
_RS11830
ABIE41_RS11835: ABIE41_RS11835 - DMT family protein, at 2,420,746 to 2,421,102
_RS11835
ABIE41_RS11840: ABIE41_RS11840 - SemiSWEET transporter, at 2,421,169 to 2,421,429
_RS11840
ABIE41_RS11845: ABIE41_RS11845 - lytic murein transglycosylase, at 2,421,557 to 2,422,741
_RS11845
Position (kb)
2419
2420
2421 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2418.866 kb on + strand at 2419.118 kb on + strand, within ABIE41_RS11825 at 2419.118 kb on + strand, within ABIE41_RS11825 at 2419.119 kb on - strand, within ABIE41_RS11825 at 2419.252 kb on + strand, within ABIE41_RS11825 at 2419.252 kb on + strand, within ABIE41_RS11825 at 2419.252 kb on + strand, within ABIE41_RS11825 at 2419.893 kb on - strand at 2420.024 kb on + strand, within ABIE41_RS11830 at 2420.025 kb on - strand, within ABIE41_RS11830 at 2420.129 kb on + strand, within ABIE41_RS11830 at 2420.130 kb on - strand, within ABIE41_RS11830 at 2420.281 kb on + strand, within ABIE41_RS11830 at 2420.281 kb on + strand, within ABIE41_RS11830 at 2420.282 kb on - strand, within ABIE41_RS11830 at 2420.433 kb on + strand, within ABIE41_RS11830 at 2420.434 kb on - strand, within ABIE41_RS11830 at 2420.612 kb on + strand at 2420.679 kb on + strand at 2420.679 kb on + strand at 2420.680 kb on - strand at 2420.948 kb on + strand, within ABIE41_RS11835 at 2420.949 kb on - strand, within ABIE41_RS11835 at 2421.008 kb on + strand, within ABIE41_RS11835 at 2421.008 kb on + strand, within ABIE41_RS11835 at 2421.008 kb on + strand, within ABIE41_RS11835 at 2421.256 kb on - strand, within ABIE41_RS11840 at 2421.256 kb on - strand, within ABIE41_RS11840 at 2421.267 kb on - strand, within ABIE41_RS11840 at 2421.522 kb on + strand at 2421.522 kb on + strand at 2421.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 2,418,866 + +0.3 2,419,118 + ABIE41_RS11825 0.22 -0.0 2,419,118 + ABIE41_RS11825 0.22 -0.1 2,419,119 - ABIE41_RS11825 0.22 +0.6 2,419,252 + ABIE41_RS11825 0.35 -1.1 2,419,252 + ABIE41_RS11825 0.35 -0.5 2,419,252 + ABIE41_RS11825 0.35 -0.1 2,419,893 - -0.6 2,420,024 + ABIE41_RS11830 0.21 +0.0 2,420,025 - ABIE41_RS11830 0.22 -1.6 2,420,129 + ABIE41_RS11830 0.34 -1.8 2,420,130 - ABIE41_RS11830 0.34 -0.3 2,420,281 + ABIE41_RS11830 0.52 -4.6 2,420,281 + ABIE41_RS11830 0.52 +0.2 2,420,282 - ABIE41_RS11830 0.52 -1.9 2,420,433 + ABIE41_RS11830 0.70 -1.0 2,420,434 - ABIE41_RS11830 0.70 +3.0 2,420,612 + +0.8 2,420,679 + -1.4 2,420,679 + +0.6 2,420,680 - -0.1 2,420,948 + ABIE41_RS11835 0.57 +0.9 2,420,949 - ABIE41_RS11835 0.57 -0.1 2,421,008 + ABIE41_RS11835 0.73 -3.6 2,421,008 + ABIE41_RS11835 0.73 -1.2 2,421,008 + ABIE41_RS11835 0.73 +0.7 2,421,256 - ABIE41_RS11840 0.33 -0.8 2,421,256 - ABIE41_RS11840 0.33 -0.6 2,421,267 - ABIE41_RS11840 0.38 -1.0 2,421,522 + -1.5 2,421,522 + -0.6 2,421,523 - -1.5
Or see this region's nucleotide sequence