Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11385

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11375 and ABIE41_RS11380 overlap by 4 nucleotidesABIE41_RS11380 and ABIE41_RS11385 are separated by 78 nucleotidesABIE41_RS11385 and ABIE41_RS11390 overlap by 12 nucleotides ABIE41_RS11375: ABIE41_RS11375 - methyl-accepting chemotaxis protein, at 2,335,689 to 2,337,686 _RS11375 ABIE41_RS11380: ABIE41_RS11380 - tRNA-binding protein, at 2,337,683 to 2,338,051 _RS11380 ABIE41_RS11385: ABIE41_RS11385 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 2,338,130 to 2,339,344 _RS11385 ABIE41_RS11390: ABIE41_RS11390 - ATP-binding protein, at 2,339,333 to 2,340,754 _RS11390 Position (kb) 2338 2339 2340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2337.816 kb on + strand, within ABIE41_RS11380at 2337.816 kb on + strand, within ABIE41_RS11380at 2337.878 kb on + strand, within ABIE41_RS11380at 2337.878 kb on + strand, within ABIE41_RS11380at 2337.879 kb on - strand, within ABIE41_RS11380at 2337.879 kb on - strand, within ABIE41_RS11380at 2338.046 kb on + strandat 2338.046 kb on + strandat 2338.046 kb on + strandat 2338.046 kb on + strandat 2338.046 kb on + strandat 2338.046 kb on + strandat 2338.047 kb on - strandat 2338.047 kb on - strandat 2338.047 kb on - strandat 2338.047 kb on - strandat 2338.047 kb on - strandat 2338.047 kb on - strandat 2338.096 kb on - strandat 2338.193 kb on + strandat 2338.313 kb on + strand, within ABIE41_RS11385at 2338.520 kb on + strand, within ABIE41_RS11385at 2338.643 kb on - strand, within ABIE41_RS11385at 2338.647 kb on - strand, within ABIE41_RS11385at 2338.647 kb on - strand, within ABIE41_RS11385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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2,337,816 + ABIE41_RS11380 0.36 -0.5
2,337,816 + ABIE41_RS11380 0.36 -0.2
2,337,878 + ABIE41_RS11380 0.53 +1.2
2,337,878 + ABIE41_RS11380 0.53 +0.4
2,337,879 - ABIE41_RS11380 0.53 +0.5
2,337,879 - ABIE41_RS11380 0.53 +0.6
2,338,046 + +0.5
2,338,046 + +1.5
2,338,046 + +1.1
2,338,046 + +0.7
2,338,046 + -0.0
2,338,046 + -2.0
2,338,047 - +0.5
2,338,047 - -0.1
2,338,047 - -0.3
2,338,047 - -0.3
2,338,047 - +2.6
2,338,047 - -0.3
2,338,096 - -0.2
2,338,193 + +2.0
2,338,313 + ABIE41_RS11385 0.15 -0.6
2,338,520 + ABIE41_RS11385 0.32 -2.4
2,338,643 - ABIE41_RS11385 0.42 +0.6
2,338,647 - ABIE41_RS11385 0.43 -2.8
2,338,647 - ABIE41_RS11385 0.43 -0.1

Or see this region's nucleotide sequence