Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07800

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07790 and ABIE41_RS07795 are separated by 3 nucleotidesABIE41_RS07795 and ABIE41_RS07800 are separated by 115 nucleotidesABIE41_RS07800 and ABIE41_RS07805 are separated by 158 nucleotides ABIE41_RS07790: ABIE41_RS07790 - DUF808 domain-containing protein, at 1,599,978 to 1,600,934 _RS07790 ABIE41_RS07795: ABIE41_RS07795 - nitroreductase, at 1,600,938 to 1,601,618 _RS07795 ABIE41_RS07800: ABIE41_RS07800 - lysine--tRNA ligase, at 1,601,734 to 1,603,443 _RS07800 ABIE41_RS07805: ABIE41_RS07805 - amidohydrolase, at 1,603,602 to 1,604,765 _RS07805 Position (kb) 1601 1602 1603 1604Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1600.893 kb on + strandat 1600.894 kb on - strandat 1600.986 kb on + strandat 1601.022 kb on + strand, within ABIE41_RS07795at 1601.022 kb on + strand, within ABIE41_RS07795at 1601.023 kb on - strand, within ABIE41_RS07795at 1601.023 kb on - strand, within ABIE41_RS07795at 1601.023 kb on - strand, within ABIE41_RS07795at 1601.023 kb on - strand, within ABIE41_RS07795at 1601.170 kb on - strand, within ABIE41_RS07795at 1601.308 kb on + strand, within ABIE41_RS07795at 1601.344 kb on + strand, within ABIE41_RS07795at 1601.345 kb on - strand, within ABIE41_RS07795at 1601.345 kb on - strand, within ABIE41_RS07795at 1601.368 kb on + strand, within ABIE41_RS07795at 1601.371 kb on + strand, within ABIE41_RS07795at 1601.371 kb on + strand, within ABIE41_RS07795at 1601.377 kb on + strand, within ABIE41_RS07795at 1601.378 kb on - strand, within ABIE41_RS07795at 1601.378 kb on - strand, within ABIE41_RS07795at 1601.527 kb on + strand, within ABIE41_RS07795at 1603.562 kb on + strandat 1603.563 kb on - strandat 1603.564 kb on + strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.565 kb on - strandat 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1603.854 kb on + strand, within ABIE41_RS07805at 1604.259 kb on - strand, within ABIE41_RS07805at 1604.260 kb on + strand, within ABIE41_RS07805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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1,600,893 + -1.3
1,600,894 - -0.3
1,600,986 + -0.9
1,601,022 + ABIE41_RS07795 0.12 +0.4
1,601,022 + ABIE41_RS07795 0.12 +0.5
1,601,023 - ABIE41_RS07795 0.12 +1.4
1,601,023 - ABIE41_RS07795 0.12 -0.0
1,601,023 - ABIE41_RS07795 0.12 +0.4
1,601,023 - ABIE41_RS07795 0.12 -1.6
1,601,170 - ABIE41_RS07795 0.34 -2.4
1,601,308 + ABIE41_RS07795 0.54 -0.2
1,601,344 + ABIE41_RS07795 0.60 -1.0
1,601,345 - ABIE41_RS07795 0.60 +0.3
1,601,345 - ABIE41_RS07795 0.60 -1.9
1,601,368 + ABIE41_RS07795 0.63 -2.0
1,601,371 + ABIE41_RS07795 0.64 +0.4
1,601,371 + ABIE41_RS07795 0.64 +0.2
1,601,377 + ABIE41_RS07795 0.64 -0.5
1,601,378 - ABIE41_RS07795 0.65 +2.1
1,601,378 - ABIE41_RS07795 0.65 -1.7
1,601,527 + ABIE41_RS07795 0.86 -1.8
1,603,562 + +0.3
1,603,563 - +2.1
1,603,564 + +0.5
1,603,565 - -0.2
1,603,565 - +1.3
1,603,565 - +0.0
1,603,565 - -0.2
1,603,565 - +0.3
1,603,565 - +0.5
1,603,565 - -1.1
1,603,565 - +1.4
1,603,854 + ABIE41_RS07805 0.22 +1.3
1,603,854 + ABIE41_RS07805 0.22 -0.1
1,603,854 + ABIE41_RS07805 0.22 -0.5
1,603,854 + ABIE41_RS07805 0.22 -2.2
1,603,854 + ABIE41_RS07805 0.22 -5.4
1,604,259 - ABIE41_RS07805 0.56 +0.1
1,604,260 + ABIE41_RS07805 0.57 +0.1

Or see this region's nucleotide sequence