Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05720

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05715 and ABIE41_RS05720 are separated by 54 nucleotidesABIE41_RS05720 and ABIE41_RS05725 are separated by 115 nucleotidesABIE41_RS05725 and ABIE41_RS05730 overlap by 4 nucleotides ABIE41_RS05715: ABIE41_RS05715 - efflux RND transporter periplasmic adaptor subunit, at 1,175,792 to 1,176,961 _RS05715 ABIE41_RS05720: ABIE41_RS05720 - TetR/AcrR family transcriptional regulator, at 1,177,016 to 1,177,789 _RS05720 ABIE41_RS05725: ABIE41_RS05725 - glutamine amidotransferase, at 1,177,905 to 1,178,696 _RS05725 ABIE41_RS05730: ABIE41_RS05730 - FAD-dependent oxidoreductase, at 1,178,693 to 1,179,934 _RS05730 Position (kb) 1177 1178Strain fitness (log2 ratio) -3 -2 -1 0 1at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.495 kb on + strand, within ABIE41_RS05715at 1176.496 kb on - strand, within ABIE41_RS05715at 1176.496 kb on - strand, within ABIE41_RS05715at 1176.496 kb on - strand, within ABIE41_RS05715at 1176.496 kb on - strand, within ABIE41_RS05715at 1176.496 kb on - strand, within ABIE41_RS05715at 1177.021 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.022 kb on + strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.023 kb on - strandat 1177.488 kb on + strand, within ABIE41_RS05720at 1177.489 kb on - strand, within ABIE41_RS05720at 1177.489 kb on - strand, within ABIE41_RS05720at 1177.494 kb on + strand, within ABIE41_RS05720at 1178.224 kb on - strand, within ABIE41_RS05725at 1178.280 kb on + strand, within ABIE41_RS05725at 1178.281 kb on - strand, within ABIE41_RS05725at 1178.281 kb on - strand, within ABIE41_RS05725at 1178.282 kb on + strand, within ABIE41_RS05725at 1178.282 kb on + strand, within ABIE41_RS05725at 1178.283 kb on - strand, within ABIE41_RS05725at 1178.317 kb on - strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.388 kb on + strand, within ABIE41_RS05725at 1178.389 kb on - strand, within ABIE41_RS05725at 1178.389 kb on - strand, within ABIE41_RS05725at 1178.491 kb on - strand, within ABIE41_RS05725at 1178.491 kb on - strand, within ABIE41_RS05725at 1178.610 kb on + strand, within ABIE41_RS05725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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1,176,495 + ABIE41_RS05715 0.60 -0.5
1,176,495 + ABIE41_RS05715 0.60 +1.5
1,176,495 + ABIE41_RS05715 0.60 +0.9
1,176,495 + ABIE41_RS05715 0.60 +0.3
1,176,495 + ABIE41_RS05715 0.60 -1.8
1,176,495 + ABIE41_RS05715 0.60 -0.5
1,176,495 + ABIE41_RS05715 0.60 +0.3
1,176,495 + ABIE41_RS05715 0.60 -0.9
1,176,496 - ABIE41_RS05715 0.60 -1.8
1,176,496 - ABIE41_RS05715 0.60 -0.2
1,176,496 - ABIE41_RS05715 0.60 -0.8
1,176,496 - ABIE41_RS05715 0.60 +0.2
1,176,496 - ABIE41_RS05715 0.60 -0.4
1,177,021 + +1.0
1,177,022 + +1.1
1,177,022 + -1.7
1,177,022 + -1.4
1,177,022 + -0.5
1,177,022 + +0.5
1,177,022 + -1.1
1,177,022 + -1.0
1,177,022 + -1.3
1,177,022 + +0.3
1,177,022 + -0.6
1,177,022 + +0.1
1,177,023 - -0.2
1,177,023 - +0.5
1,177,023 - -0.7
1,177,023 - -0.4
1,177,023 - -2.6
1,177,023 - +0.5
1,177,023 - -0.2
1,177,023 - -1.9
1,177,023 - -0.5
1,177,488 + ABIE41_RS05720 0.61 +0.1
1,177,489 - ABIE41_RS05720 0.61 -0.4
1,177,489 - ABIE41_RS05720 0.61 -1.2
1,177,494 + ABIE41_RS05720 0.62 -1.4
1,178,224 - ABIE41_RS05725 0.40 +0.5
1,178,280 + ABIE41_RS05725 0.47 -2.8
1,178,281 - ABIE41_RS05725 0.47 -1.7
1,178,281 - ABIE41_RS05725 0.47 -2.8
1,178,282 + ABIE41_RS05725 0.48 +0.4
1,178,282 + ABIE41_RS05725 0.48 +0.2
1,178,283 - ABIE41_RS05725 0.48 -2.2
1,178,317 - ABIE41_RS05725 0.52 -1.6
1,178,388 + ABIE41_RS05725 0.61 -1.3
1,178,388 + ABIE41_RS05725 0.61 -0.9
1,178,388 + ABIE41_RS05725 0.61 +0.2
1,178,388 + ABIE41_RS05725 0.61 -2.0
1,178,388 + ABIE41_RS05725 0.61 -1.0
1,178,388 + ABIE41_RS05725 0.61 -0.1
1,178,389 - ABIE41_RS05725 0.61 +1.7
1,178,389 - ABIE41_RS05725 0.61 -0.9
1,178,491 - ABIE41_RS05725 0.74 -0.3
1,178,491 - ABIE41_RS05725 0.74 +0.0
1,178,610 + ABIE41_RS05725 0.89 +0.9

Or see this region's nucleotide sequence