Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04105 and ABIE41_RS04110 are separated by 149 nucleotides ABIE41_RS04110 and ABIE41_RS04115 are separated by 131 nucleotides
ABIE41_RS04105: ABIE41_RS04105 - transglutaminase family protein, at 847,775 to 848,653
_RS04105
ABIE41_RS04110: ABIE41_RS04110 - hypothetical protein, at 848,803 to 849,081
_RS04110
ABIE41_RS04115: ABIE41_RS04115 - ABC transporter ATP-binding protein/permease, at 849,213 to 851,021
_RS04115
Position (kb) 848
849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.043 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.106 kb on + strand, within ABIE41_RS04105 at 848.107 kb on - strand, within ABIE41_RS04105 at 848.181 kb on + strand, within ABIE41_RS04105 at 848.313 kb on + strand, within ABIE41_RS04105 at 848.313 kb on + strand, within ABIE41_RS04105 at 848.314 kb on - strand, within ABIE41_RS04105 at 848.346 kb on + strand, within ABIE41_RS04105 at 848.346 kb on + strand, within ABIE41_RS04105 at 848.347 kb on - strand, within ABIE41_RS04105 at 848.347 kb on - strand, within ABIE41_RS04105 at 848.487 kb on + strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.488 kb on - strand, within ABIE41_RS04105 at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.622 kb on + strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.623 kb on - strand at 848.649 kb on + strand at 848.649 kb on + strand at 848.650 kb on - strand at 848.971 kb on - strand, within ABIE41_RS04110 at 849.425 kb on + strand, within ABIE41_RS04115 at 849.571 kb on + strand, within ABIE41_RS04115 at 849.640 kb on + strand, within ABIE41_RS04115 at 849.676 kb on + strand, within ABIE41_RS04115 at 849.677 kb on - strand, within ABIE41_RS04115 at 849.677 kb on - strand, within ABIE41_RS04115 at 849.678 kb on - strand, within ABIE41_RS04115 at 849.718 kb on - strand, within ABIE41_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 848,043 + ABIE41_RS04105 0.30 -0.1 848,043 + ABIE41_RS04105 0.30 -0.4 848,043 + ABIE41_RS04105 0.30 -0.2 848,043 + ABIE41_RS04105 0.30 +0.5 848,043 + ABIE41_RS04105 0.30 -2.9 848,106 + ABIE41_RS04105 0.38 -0.2 848,106 + ABIE41_RS04105 0.38 -1.0 848,106 + ABIE41_RS04105 0.38 -0.6 848,106 + ABIE41_RS04105 0.38 -1.7 848,106 + ABIE41_RS04105 0.38 -1.4 848,106 + ABIE41_RS04105 0.38 +0.5 848,106 + ABIE41_RS04105 0.38 +3.2 848,107 - ABIE41_RS04105 0.38 +0.9 848,181 + ABIE41_RS04105 0.46 -0.4 848,313 + ABIE41_RS04105 0.61 -1.4 848,313 + ABIE41_RS04105 0.61 -0.4 848,314 - ABIE41_RS04105 0.61 -2.8 848,346 + ABIE41_RS04105 0.65 -1.2 848,346 + ABIE41_RS04105 0.65 -1.4 848,347 - ABIE41_RS04105 0.65 -1.7 848,347 - ABIE41_RS04105 0.65 +0.1 848,487 + ABIE41_RS04105 0.81 -0.4 848,488 - ABIE41_RS04105 0.81 +0.1 848,488 - ABIE41_RS04105 0.81 +0.3 848,488 - ABIE41_RS04105 0.81 -0.3 848,622 + -0.8 848,622 + +0.6 848,622 + -0.1 848,622 + +0.2 848,622 + -0.1 848,622 + +0.6 848,622 + +1.8 848,622 + -0.1 848,623 - +1.1 848,623 - +0.4 848,623 - -0.5 848,623 - +2.2 848,649 + -3.3 848,649 + +0.2 848,650 - -0.0 848,971 - ABIE41_RS04110 0.60 +0.1 849,425 + ABIE41_RS04115 0.12 +0.6 849,571 + ABIE41_RS04115 0.20 +0.6 849,640 + ABIE41_RS04115 0.24 -2.5 849,676 + ABIE41_RS04115 0.26 +0.3 849,677 - ABIE41_RS04115 0.26 -1.0 849,677 - ABIE41_RS04115 0.26 -0.7 849,678 - ABIE41_RS04115 0.26 +0.6 849,718 - ABIE41_RS04115 0.28 +0.6
Or see this region's nucleotide sequence