Strain Fitness in Pseudomonas sp. RS175 around PFR28_04464

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04463 and PFR28_04464 overlap by 8 nucleotidesPFR28_04464 and PFR28_04465 are separated by 186 nucleotides PFR28_04463: PFR28_04463 - hypothetical protein, at 5,081,196 to 5,082,248 _04463 PFR28_04464: PFR28_04464 - Protein ClpV1, at 5,082,241 to 5,084,919 _04464 PFR28_04465: PFR28_04465 - Actin cross-linking toxin VgrG1, at 5,085,106 to 5,087,037 _04465 Position (kb) 5082 5083 5084 5085Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5081.269 kb on - strandat 5081.509 kb on - strand, within PFR28_04463at 5081.509 kb on - strand, within PFR28_04463at 5081.509 kb on - strand, within PFR28_04463at 5081.509 kb on - strand, within PFR28_04463at 5081.652 kb on + strand, within PFR28_04463at 5081.652 kb on + strand, within PFR28_04463at 5081.742 kb on + strand, within PFR28_04463at 5081.742 kb on + strand, within PFR28_04463at 5081.742 kb on + strand, within PFR28_04463at 5081.743 kb on - strand, within PFR28_04463at 5081.743 kb on - strand, within PFR28_04463at 5081.743 kb on - strand, within PFR28_04463at 5081.743 kb on - strand, within PFR28_04463at 5081.743 kb on - strand, within PFR28_04463at 5081.805 kb on + strand, within PFR28_04463at 5081.835 kb on + strand, within PFR28_04463at 5081.835 kb on + strand, within PFR28_04463at 5081.835 kb on + strand, within PFR28_04463at 5081.835 kb on + strand, within PFR28_04463at 5081.836 kb on - strand, within PFR28_04463at 5081.836 kb on - strand, within PFR28_04463at 5081.836 kb on - strand, within PFR28_04463at 5081.836 kb on - strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.982 kb on + strand, within PFR28_04463at 5081.983 kb on - strand, within PFR28_04463at 5081.983 kb on - strand, within PFR28_04463at 5081.983 kb on - strand, within PFR28_04463at 5081.983 kb on - strand, within PFR28_04463at 5082.140 kb on + strand, within PFR28_04463at 5082.140 kb on + strand, within PFR28_04463at 5082.141 kb on - strand, within PFR28_04463at 5082.141 kb on - strand, within PFR28_04463at 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.178 kb on + strandat 5082.179 kb on - strandat 5082.179 kb on - strandat 5082.179 kb on - strandat 5082.179 kb on - strandat 5082.179 kb on - strandat 5082.179 kb on - strandat 5082.181 kb on + strandat 5082.182 kb on - strandat 5082.182 kb on - strandat 5082.292 kb on + strandat 5082.292 kb on + strandat 5082.293 kb on - strandat 5082.293 kb on - strandat 5082.293 kb on - strandat 5082.343 kb on + strandat 5082.343 kb on + strandat 5082.344 kb on - strandat 5082.344 kb on - strandat 5082.544 kb on + strand, within PFR28_04464at 5082.545 kb on - strand, within PFR28_04464at 5082.545 kb on - strand, within PFR28_04464at 5082.545 kb on - strand, within PFR28_04464at 5082.586 kb on + strand, within PFR28_04464at 5082.697 kb on + strand, within PFR28_04464at 5082.697 kb on + strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.698 kb on - strand, within PFR28_04464at 5082.801 kb on + strand, within PFR28_04464at 5082.801 kb on + strand, within PFR28_04464at 5083.016 kb on + strand, within PFR28_04464at 5083.017 kb on - strand, within PFR28_04464at 5083.017 kb on - strand, within PFR28_04464at 5083.017 kb on - strand, within PFR28_04464at 5083.288 kb on + strand, within PFR28_04464at 5083.289 kb on - strand, within PFR28_04464at 5083.289 kb on - strand, within PFR28_04464at 5083.289 kb on - strand, within PFR28_04464at 5083.471 kb on + strand, within PFR28_04464at 5084.114 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.272 kb on + strand, within PFR28_04464at 5084.273 kb on - strand, within PFR28_04464at 5084.297 kb on + strand, within PFR28_04464at 5084.297 kb on + strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.326 kb on + strand, within PFR28_04464at 5084.327 kb on - strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.614 kb on + strand, within PFR28_04464at 5084.615 kb on - strand, within PFR28_04464at 5084.695 kb on - strandat 5084.711 kb on - strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.981 kb on + strandat 5084.989 kb on + strandat 5084.990 kb on - strandat 5085.087 kb on + strandat 5085.088 kb on - strandat 5085.088 kb on - strandat 5085.088 kb on - strandat 5085.110 kb on + strandat 5085.111 kb on - strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.379 kb on + strand, within PFR28_04465at 5085.379 kb on + strand, within PFR28_04465at 5085.380 kb on - strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.554 kb on - strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.707 kb on - strand, within PFR28_04465at 5085.881 kb on - strand, within PFR28_04465at 5085.887 kb on - strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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5,081,269 - +0.6
5,081,509 - PFR28_04463 0.30 -0.5
5,081,509 - PFR28_04463 0.30 -0.6
5,081,509 - PFR28_04463 0.30 -1.9
5,081,509 - PFR28_04463 0.30 -0.0
5,081,652 + PFR28_04463 0.43 +0.4
5,081,652 + PFR28_04463 0.43 +0.2
5,081,742 + PFR28_04463 0.52 -0.5
5,081,742 + PFR28_04463 0.52 -0.6
5,081,742 + PFR28_04463 0.52 +0.4
5,081,743 - PFR28_04463 0.52 -0.4
5,081,743 - PFR28_04463 0.52 -0.1
5,081,743 - PFR28_04463 0.52 +0.1
5,081,743 - PFR28_04463 0.52 +1.0
5,081,743 - PFR28_04463 0.52 -0.7
5,081,805 + PFR28_04463 0.58 +0.7
5,081,835 + PFR28_04463 0.61 -1.1
5,081,835 + PFR28_04463 0.61 +0.1
5,081,835 + PFR28_04463 0.61 -0.8
5,081,835 + PFR28_04463 0.61 -0.3
5,081,836 - PFR28_04463 0.61 -1.1
5,081,836 - PFR28_04463 0.61 +0.4
5,081,836 - PFR28_04463 0.61 +0.1
5,081,836 - PFR28_04463 0.61 +0.4
5,081,982 + PFR28_04463 0.75 -0.8
5,081,982 + PFR28_04463 0.75 +0.1
5,081,982 + PFR28_04463 0.75 -2.2
5,081,982 + PFR28_04463 0.75 -0.2
5,081,982 + PFR28_04463 0.75 -1.4
5,081,982 + PFR28_04463 0.75 -1.3
5,081,982 + PFR28_04463 0.75 -0.6
5,081,982 + PFR28_04463 0.75 -0.6
5,081,983 - PFR28_04463 0.75 -2.0
5,081,983 - PFR28_04463 0.75 +0.5
5,081,983 - PFR28_04463 0.75 -1.6
5,081,983 - PFR28_04463 0.75 -0.2
5,082,140 + PFR28_04463 0.90 -0.2
5,082,140 + PFR28_04463 0.90 +0.0
5,082,141 - PFR28_04463 0.90 +1.2
5,082,141 - PFR28_04463 0.90 -0.4
5,082,178 + +2.3
5,082,178 + +0.2
5,082,178 + -0.5
5,082,178 + -1.1
5,082,178 + -0.4
5,082,178 + -0.5
5,082,178 + -0.7
5,082,179 - -4.2
5,082,179 - -0.1
5,082,179 - -0.5
5,082,179 - +0.1
5,082,179 - -0.6
5,082,179 - +0.9
5,082,181 + +0.2
5,082,182 - -0.2
5,082,182 - +0.8
5,082,292 + +1.3
5,082,292 + -0.4
5,082,293 - +0.1
5,082,293 - +0.3
5,082,293 - +0.3
5,082,343 + +1.6
5,082,343 + +0.2
5,082,344 - -1.6
5,082,344 - +0.3
5,082,544 + PFR28_04464 0.11 -0.3
5,082,545 - PFR28_04464 0.11 +2.1
5,082,545 - PFR28_04464 0.11 -2.2
5,082,545 - PFR28_04464 0.11 -0.8
5,082,586 + PFR28_04464 0.13 -0.9
5,082,697 + PFR28_04464 0.17 +0.2
5,082,697 + PFR28_04464 0.17 -1.1
5,082,698 - PFR28_04464 0.17 +0.8
5,082,698 - PFR28_04464 0.17 +1.3
5,082,698 - PFR28_04464 0.17 -0.4
5,082,698 - PFR28_04464 0.17 +0.8
5,082,698 - PFR28_04464 0.17 +0.5
5,082,698 - PFR28_04464 0.17 -0.5
5,082,801 + PFR28_04464 0.21 +0.9
5,082,801 + PFR28_04464 0.21 +1.0
5,083,016 + PFR28_04464 0.29 +0.3
5,083,017 - PFR28_04464 0.29 -1.3
5,083,017 - PFR28_04464 0.29 -0.2
5,083,017 - PFR28_04464 0.29 +0.2
5,083,288 + PFR28_04464 0.39 +0.3
5,083,289 - PFR28_04464 0.39 +0.2
5,083,289 - PFR28_04464 0.39 -0.2
5,083,289 - PFR28_04464 0.39 +0.6
5,083,471 + PFR28_04464 0.46 -0.7
5,084,114 + PFR28_04464 0.70 -0.0
5,084,182 + PFR28_04464 0.72 +0.3
5,084,182 + PFR28_04464 0.72 -3.1
5,084,182 + PFR28_04464 0.72 +0.8
5,084,182 + PFR28_04464 0.72 -1.3
5,084,182 + PFR28_04464 0.72 -3.1
5,084,182 + PFR28_04464 0.72 +0.7
5,084,182 + PFR28_04464 0.72 -3.3
5,084,182 + PFR28_04464 0.72 +0.0
5,084,182 + PFR28_04464 0.72 -0.9
5,084,183 - PFR28_04464 0.72 -0.8
5,084,183 - PFR28_04464 0.72 +0.1
5,084,183 - PFR28_04464 0.72 -0.9
5,084,183 - PFR28_04464 0.72 +1.1
5,084,272 + PFR28_04464 0.76 -1.5
5,084,273 - PFR28_04464 0.76 -0.0
5,084,297 + PFR28_04464 0.77 -0.6
5,084,297 + PFR28_04464 0.77 +0.7
5,084,298 - PFR28_04464 0.77 +0.8
5,084,298 - PFR28_04464 0.77 -0.5
5,084,298 - PFR28_04464 0.77 -0.6
5,084,298 - PFR28_04464 0.77 -0.5
5,084,298 - PFR28_04464 0.77 -1.0
5,084,326 + PFR28_04464 0.78 +0.3
5,084,327 - PFR28_04464 0.78 -2.2
5,084,611 + PFR28_04464 0.88 +0.8
5,084,611 + PFR28_04464 0.88 +0.8
5,084,611 + PFR28_04464 0.88 +0.3
5,084,614 + PFR28_04464 0.89 +0.2
5,084,615 - PFR28_04464 0.89 +0.2
5,084,695 - -1.0
5,084,711 - +0.9
5,084,929 + -0.4
5,084,929 + -1.5
5,084,929 + +0.3
5,084,929 + +0.0
5,084,930 - -4.4
5,084,930 - +0.8
5,084,930 - +1.0
5,084,930 - -0.4
5,084,981 + -0.2
5,084,989 + +0.4
5,084,990 - -0.3
5,085,087 + -0.7
5,085,088 - +0.2
5,085,088 - -0.7
5,085,088 - -1.9
5,085,110 + -0.4
5,085,111 - -0.1
5,085,217 + -0.4
5,085,217 + +0.3
5,085,217 + +0.7
5,085,217 + -0.6
5,085,217 + -0.1
5,085,217 + +1.1
5,085,217 + -2.0
5,085,217 + -0.6
5,085,218 - +0.7
5,085,218 - -0.0
5,085,218 - -0.7
5,085,218 - -1.5
5,085,218 - -2.5
5,085,218 - -0.0
5,085,218 - +1.2
5,085,379 + PFR28_04465 0.14 -0.4
5,085,379 + PFR28_04465 0.14 +0.1
5,085,380 - PFR28_04465 0.14 +0.5
5,085,435 + PFR28_04465 0.17 -0.1
5,085,435 + PFR28_04465 0.17 -2.0
5,085,435 + PFR28_04465 0.17 +0.5
5,085,554 - PFR28_04465 0.23 +0.5
5,085,607 + PFR28_04465 0.26 -1.2
5,085,607 + PFR28_04465 0.26 -0.2
5,085,607 + PFR28_04465 0.26 -0.0
5,085,607 + PFR28_04465 0.26 -2.9
5,085,607 + PFR28_04465 0.26 -1.7
5,085,607 + PFR28_04465 0.26 -0.0
5,085,607 + PFR28_04465 0.26 -0.1
5,085,607 + PFR28_04465 0.26 +1.0
5,085,607 + PFR28_04465 0.26 +1.3
5,085,607 + PFR28_04465 0.26 -0.3
5,085,608 - PFR28_04465 0.26 -0.4
5,085,608 - PFR28_04465 0.26 +0.5
5,085,608 - PFR28_04465 0.26 +0.4
5,085,608 - PFR28_04465 0.26 -0.1
5,085,608 - PFR28_04465 0.26 +0.6
5,085,608 - PFR28_04465 0.26 -0.6
5,085,610 + PFR28_04465 0.26 -3.8
5,085,610 + PFR28_04465 0.26 -0.2
5,085,610 + PFR28_04465 0.26 -0.8
5,085,610 + PFR28_04465 0.26 +1.1
5,085,610 + PFR28_04465 0.26 -0.1
5,085,610 + PFR28_04465 0.26 +0.1
5,085,611 - PFR28_04465 0.26 -0.7
5,085,611 - PFR28_04465 0.26 +0.7
5,085,611 - PFR28_04465 0.26 -0.0
5,085,704 - PFR28_04465 0.31 -1.0
5,085,704 - PFR28_04465 0.31 +1.9
5,085,704 - PFR28_04465 0.31 +0.7
5,085,707 - PFR28_04465 0.31 +0.3
5,085,881 - PFR28_04465 0.40 -0.1
5,085,887 - PFR28_04465 0.40 -0.3
5,085,898 + PFR28_04465 0.41 +0.2
5,085,898 + PFR28_04465 0.41 -0.7
5,085,898 + PFR28_04465 0.41 -0.4
5,085,898 + PFR28_04465 0.41 +0.7
5,085,899 - PFR28_04465 0.41 +0.4
5,085,899 - PFR28_04465 0.41 +1.0
5,085,899 - PFR28_04465 0.41 -0.2
5,085,899 - PFR28_04465 0.41 +0.4
5,085,899 - PFR28_04465 0.41 +0.5
5,085,899 - PFR28_04465 0.41 -0.7
5,085,899 - PFR28_04465 0.41 +1.3
5,085,899 - PFR28_04465 0.41 -0.8
5,085,899 - PFR28_04465 0.41 +1.3

Or see this region's nucleotide sequence