Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03337 and PFR28_03338 are separated by 52 nucleotides PFR28_03338 and PFR28_03339 are separated by 243 nucleotides PFR28_03339 and PFR28_03340 are separated by 101 nucleotides
PFR28_03337: PFR28_03337 - 60 kDa chaperonin, at 3,844,935 to 3,846,581
_03337
PFR28_03338: PFR28_03338 - 10 kDa chaperonin, at 3,846,634 to 3,846,927
_03338
PFR28_03339: PFR28_03339 - hypothetical protein, at 3,847,171 to 3,847,647
_03339
PFR28_03340: PFR28_03340 - hypothetical protein, at 3,847,749 to 3,848,480
_03340
Position (kb)
3846
3847 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3846.596 kb on - strand at 3846.600 kb on - strand at 3846.600 kb on - strand at 3846.600 kb on - strand at 3846.600 kb on - strand at 3846.607 kb on - strand at 3846.967 kb on - strand at 3846.982 kb on - strand at 3847.071 kb on - strand at 3847.071 kb on - strand at 3847.071 kb on - strand at 3847.071 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.075 kb on - strand at 3847.083 kb on - strand at 3847.083 kb on - strand at 3847.094 kb on - strand at 3847.094 kb on - strand at 3847.094 kb on - strand at 3847.094 kb on - strand at 3847.094 kb on - strand at 3847.172 kb on + strand at 3847.261 kb on + strand, within PFR28_03339 at 3847.261 kb on + strand, within PFR28_03339 at 3847.261 kb on + strand, within PFR28_03339 at 3847.261 kb on + strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.262 kb on - strand, within PFR28_03339 at 3847.506 kb on + strand, within PFR28_03339 at 3847.513 kb on + strand, within PFR28_03339 at 3847.513 kb on + strand, within PFR28_03339 at 3847.514 kb on - strand, within PFR28_03339 at 3847.514 kb on - strand, within PFR28_03339 at 3847.519 kb on + strand, within PFR28_03339 at 3847.519 kb on + strand, within PFR28_03339 at 3847.520 kb on - strand, within PFR28_03339 at 3847.594 kb on + strand, within PFR28_03339 at 3847.594 kb on + strand, within PFR28_03339 at 3847.595 kb on - strand, within PFR28_03339 at 3847.595 kb on - strand, within PFR28_03339 at 3847.595 kb on - strand, within PFR28_03339 at 3847.595 kb on - strand, within PFR28_03339 at 3847.685 kb on + strand at 3847.686 kb on - strand at 3847.715 kb on - strand at 3847.715 kb on - strand at 3847.715 kb on - strand at 3847.715 kb on - strand at 3847.715 kb on - strand at 3847.724 kb on + strand at 3847.724 kb on + strand at 3847.725 kb on - strand at 3847.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,846,596 - +1.4 3,846,600 - +1.4 3,846,600 - -0.2 3,846,600 - -0.2 3,846,600 - +1.7 3,846,607 - +1.6 3,846,967 - +1.1 3,846,982 - +0.1 3,847,071 - -1.2 3,847,071 - -1.9 3,847,071 - -0.1 3,847,071 - +1.0 3,847,075 - +0.7 3,847,075 - -0.1 3,847,075 - -0.8 3,847,075 - +0.4 3,847,075 - -0.1 3,847,075 - -1.2 3,847,075 - +0.5 3,847,075 - -0.2 3,847,075 - -1.2 3,847,075 - +1.3 3,847,083 - -0.4 3,847,083 - -0.1 3,847,094 - -0.1 3,847,094 - -1.5 3,847,094 - +1.6 3,847,094 - +0.5 3,847,094 - +1.1 3,847,172 + +1.7 3,847,261 + PFR28_03339 0.19 -1.1 3,847,261 + PFR28_03339 0.19 +0.2 3,847,261 + PFR28_03339 0.19 -0.1 3,847,261 + PFR28_03339 0.19 +0.5 3,847,262 - PFR28_03339 0.19 +0.9 3,847,262 - PFR28_03339 0.19 -1.2 3,847,262 - PFR28_03339 0.19 +0.7 3,847,262 - PFR28_03339 0.19 -0.2 3,847,262 - PFR28_03339 0.19 -0.6 3,847,262 - PFR28_03339 0.19 +2.2 3,847,262 - PFR28_03339 0.19 -3.5 3,847,506 + PFR28_03339 0.70 -0.2 3,847,513 + PFR28_03339 0.72 -2.5 3,847,513 + PFR28_03339 0.72 -1.2 3,847,514 - PFR28_03339 0.72 +0.8 3,847,514 - PFR28_03339 0.72 +0.1 3,847,519 + PFR28_03339 0.73 -0.4 3,847,519 + PFR28_03339 0.73 -0.2 3,847,520 - PFR28_03339 0.73 +0.4 3,847,594 + PFR28_03339 0.89 +1.4 3,847,594 + PFR28_03339 0.89 -0.0 3,847,595 - PFR28_03339 0.89 +0.4 3,847,595 - PFR28_03339 0.89 +1.4 3,847,595 - PFR28_03339 0.89 -1.5 3,847,595 - PFR28_03339 0.89 +0.4 3,847,685 + +0.8 3,847,686 - -0.7 3,847,715 - -1.2 3,847,715 - +0.0 3,847,715 - +0.6 3,847,715 - +0.0 3,847,715 - +0.6 3,847,724 + -0.3 3,847,724 + +0.6 3,847,725 - -0.1 3,847,816 - -2.1
Or see this region's nucleotide sequence