Strain Fitness in Pseudomonas sp. RS175 around PFR28_03338

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03337 and PFR28_03338 are separated by 52 nucleotidesPFR28_03338 and PFR28_03339 are separated by 243 nucleotidesPFR28_03339 and PFR28_03340 are separated by 101 nucleotides PFR28_03337: PFR28_03337 - 60 kDa chaperonin, at 3,844,935 to 3,846,581 _03337 PFR28_03338: PFR28_03338 - 10 kDa chaperonin, at 3,846,634 to 3,846,927 _03338 PFR28_03339: PFR28_03339 - hypothetical protein, at 3,847,171 to 3,847,647 _03339 PFR28_03340: PFR28_03340 - hypothetical protein, at 3,847,749 to 3,848,480 _03340 Position (kb) 3846 3847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3846.596 kb on - strandat 3846.600 kb on - strandat 3846.600 kb on - strandat 3846.600 kb on - strandat 3846.600 kb on - strandat 3846.607 kb on - strandat 3846.967 kb on - strandat 3846.982 kb on - strandat 3847.071 kb on - strandat 3847.071 kb on - strandat 3847.071 kb on - strandat 3847.071 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.075 kb on - strandat 3847.083 kb on - strandat 3847.083 kb on - strandat 3847.094 kb on - strandat 3847.094 kb on - strandat 3847.094 kb on - strandat 3847.094 kb on - strandat 3847.094 kb on - strandat 3847.172 kb on + strandat 3847.261 kb on + strand, within PFR28_03339at 3847.261 kb on + strand, within PFR28_03339at 3847.261 kb on + strand, within PFR28_03339at 3847.261 kb on + strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.262 kb on - strand, within PFR28_03339at 3847.506 kb on + strand, within PFR28_03339at 3847.513 kb on + strand, within PFR28_03339at 3847.513 kb on + strand, within PFR28_03339at 3847.514 kb on - strand, within PFR28_03339at 3847.514 kb on - strand, within PFR28_03339at 3847.519 kb on + strand, within PFR28_03339at 3847.519 kb on + strand, within PFR28_03339at 3847.520 kb on - strand, within PFR28_03339at 3847.594 kb on + strand, within PFR28_03339at 3847.594 kb on + strand, within PFR28_03339at 3847.595 kb on - strand, within PFR28_03339at 3847.595 kb on - strand, within PFR28_03339at 3847.595 kb on - strand, within PFR28_03339at 3847.595 kb on - strand, within PFR28_03339at 3847.685 kb on + strandat 3847.686 kb on - strandat 3847.715 kb on - strandat 3847.715 kb on - strandat 3847.715 kb on - strandat 3847.715 kb on - strandat 3847.715 kb on - strandat 3847.724 kb on + strandat 3847.724 kb on + strandat 3847.725 kb on - strandat 3847.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,846,596 - +1.4
3,846,600 - +1.4
3,846,600 - -0.2
3,846,600 - -0.2
3,846,600 - +1.7
3,846,607 - +1.6
3,846,967 - +1.1
3,846,982 - +0.1
3,847,071 - -1.2
3,847,071 - -1.9
3,847,071 - -0.1
3,847,071 - +1.0
3,847,075 - +0.7
3,847,075 - -0.1
3,847,075 - -0.8
3,847,075 - +0.4
3,847,075 - -0.1
3,847,075 - -1.2
3,847,075 - +0.5
3,847,075 - -0.2
3,847,075 - -1.2
3,847,075 - +1.3
3,847,083 - -0.4
3,847,083 - -0.1
3,847,094 - -0.1
3,847,094 - -1.5
3,847,094 - +1.6
3,847,094 - +0.5
3,847,094 - +1.1
3,847,172 + +1.7
3,847,261 + PFR28_03339 0.19 -1.1
3,847,261 + PFR28_03339 0.19 +0.2
3,847,261 + PFR28_03339 0.19 -0.1
3,847,261 + PFR28_03339 0.19 +0.5
3,847,262 - PFR28_03339 0.19 +0.9
3,847,262 - PFR28_03339 0.19 -1.2
3,847,262 - PFR28_03339 0.19 +0.7
3,847,262 - PFR28_03339 0.19 -0.2
3,847,262 - PFR28_03339 0.19 -0.6
3,847,262 - PFR28_03339 0.19 +2.2
3,847,262 - PFR28_03339 0.19 -3.5
3,847,506 + PFR28_03339 0.70 -0.2
3,847,513 + PFR28_03339 0.72 -2.5
3,847,513 + PFR28_03339 0.72 -1.2
3,847,514 - PFR28_03339 0.72 +0.8
3,847,514 - PFR28_03339 0.72 +0.1
3,847,519 + PFR28_03339 0.73 -0.4
3,847,519 + PFR28_03339 0.73 -0.2
3,847,520 - PFR28_03339 0.73 +0.4
3,847,594 + PFR28_03339 0.89 +1.4
3,847,594 + PFR28_03339 0.89 -0.0
3,847,595 - PFR28_03339 0.89 +0.4
3,847,595 - PFR28_03339 0.89 +1.4
3,847,595 - PFR28_03339 0.89 -1.5
3,847,595 - PFR28_03339 0.89 +0.4
3,847,685 + +0.8
3,847,686 - -0.7
3,847,715 - -1.2
3,847,715 - +0.0
3,847,715 - +0.6
3,847,715 - +0.0
3,847,715 - +0.6
3,847,724 + -0.3
3,847,724 + +0.6
3,847,725 - -0.1
3,847,816 - -2.1

Or see this region's nucleotide sequence