Strain Fitness in Pseudomonas sp. RS175 around PFR28_00717

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00715 and PFR28_00716 are separated by 159 nucleotidesPFR28_00716 and PFR28_00717 are separated by 32 nucleotidesPFR28_00717 and PFR28_00718 are separated by 127 nucleotidesPFR28_00718 and PFR28_00719 are separated by 77 nucleotides PFR28_00715: PFR28_00715 - malonic semialdehyde reductase RutE, at 755,899 to 756,492 _00715 PFR28_00716: PFR28_00716 - hypothetical protein, at 756,652 to 757,101 _00716 PFR28_00717: PFR28_00717 - hypothetical protein, at 757,134 to 758,363 _00717 PFR28_00718: PFR28_00718 - hypothetical protein, at 758,491 to 758,868 _00718 PFR28_00719: PFR28_00719 - hypothetical protein, at 758,946 to 759,416 _00719 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 756.320 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.348 kb on - strand, within PFR28_00715at 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.610 kb on - strandat 756.680 kb on + strandat 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 757.085 kb on + strandat 757.086 kb on - strandat 757.221 kb on + strandat 757.221 kb on + strandat 757.222 kb on - strandat 757.330 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717at 757.426 kb on - strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.625 kb on + strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.626 kb on - strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.684 kb on + strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.685 kb on - strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.908 kb on + strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 757.909 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.038 kb on - strand, within PFR28_00717at 758.040 kb on + strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717at 758.041 kb on - strand, within PFR28_00717at 758.111 kb on - strand, within PFR28_00717at 758.315 kb on + strandat 758.316 kb on - strandat 758.316 kb on - strandat 758.345 kb on + strandat 758.346 kb on - strandat 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.800 kb on + strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.801 kb on - strand, within PFR28_00718at 758.895 kb on - strandat 758.999 kb on - strand, within PFR28_00719at 758.999 kb on - strand, within PFR28_00719at 758.999 kb on - strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.052 kb on + strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.053 kb on - strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.118 kb on + strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.119 kb on - strand, within PFR28_00719at 759.142 kb on + strand, within PFR28_00719at 759.142 kb on + strand, within PFR28_00719at 759.247 kb on + strand, within PFR28_00719at 759.247 kb on + strand, within PFR28_00719at 759.248 kb on - strand, within PFR28_00719at 759.248 kb on - strand, within PFR28_00719at 759.292 kb on + strand, within PFR28_00719at 759.292 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.307 kb on + strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719at 759.308 kb on - strand, within PFR28_00719

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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756,320 + PFR28_00715 0.71 +0.2
756,347 + PFR28_00715 0.75 -2.9
756,347 + PFR28_00715 0.75 -0.4
756,348 - PFR28_00715 0.76 -0.6
756,534 + +1.5
756,534 + -1.3
756,534 + -0.3
756,534 + -1.4
756,534 + -0.1
756,535 - +0.3
756,535 - +0.9
756,535 - -0.1
756,535 - +0.6
756,535 - -0.6
756,535 - +1.0
756,535 - +1.2
756,535 - +0.2
756,535 - +0.0
756,535 - +1.4
756,609 + +1.6
756,609 + -0.3
756,609 + +0.3
756,610 - -2.2
756,680 + -0.1
756,787 + PFR28_00716 0.30 -2.0
756,787 + PFR28_00716 0.30 -1.0
756,787 + PFR28_00716 0.30 -0.5
756,787 + PFR28_00716 0.30 +0.6
756,788 - PFR28_00716 0.30 +0.9
756,788 - PFR28_00716 0.30 -2.2
756,790 + PFR28_00716 0.31 -2.2
756,790 + PFR28_00716 0.31 -2.1
756,791 - PFR28_00716 0.31 +0.0
756,791 - PFR28_00716 0.31 -2.0
756,791 - PFR28_00716 0.31 +0.2
756,791 - PFR28_00716 0.31 -1.4
756,791 - PFR28_00716 0.31 -1.1
757,085 + -0.0
757,086 - -1.0
757,221 + +0.5
757,221 + +1.6
757,222 - +0.4
757,330 - PFR28_00717 0.16 -3.1
757,426 - PFR28_00717 0.24 +0.3
757,426 - PFR28_00717 0.24 +0.3
757,625 + PFR28_00717 0.40 +0.2
757,625 + PFR28_00717 0.40 +1.1
757,625 + PFR28_00717 0.40 +0.5
757,625 + PFR28_00717 0.40 -0.7
757,625 + PFR28_00717 0.40 -0.9
757,626 - PFR28_00717 0.40 +1.0
757,626 - PFR28_00717 0.40 -0.1
757,626 - PFR28_00717 0.40 +0.0
757,626 - PFR28_00717 0.40 -0.7
757,684 + PFR28_00717 0.45 +1.1
757,684 + PFR28_00717 0.45 -2.1
757,684 + PFR28_00717 0.45 -0.5
757,685 - PFR28_00717 0.45 -1.2
757,685 - PFR28_00717 0.45 +0.2
757,908 + PFR28_00717 0.63 +1.1
757,908 + PFR28_00717 0.63 -0.5
757,909 - PFR28_00717 0.63 -0.5
757,909 - PFR28_00717 0.63 -0.5
757,909 - PFR28_00717 0.63 +1.5
757,909 - PFR28_00717 0.63 -0.5
757,909 - PFR28_00717 0.63 -0.1
757,909 - PFR28_00717 0.63 +0.8
757,909 - PFR28_00717 0.63 -0.8
758,038 - PFR28_00717 0.73 -1.2
758,038 - PFR28_00717 0.73 -0.2
758,038 - PFR28_00717 0.73 -2.2
758,040 + PFR28_00717 0.74 -0.1
758,041 - PFR28_00717 0.74 -0.6
758,041 - PFR28_00717 0.74 -0.9
758,111 - PFR28_00717 0.79 +0.5
758,315 + -1.5
758,316 - -0.4
758,316 - -0.3
758,345 + -1.0
758,346 - -1.0
758,800 + PFR28_00718 0.82 +0.2
758,800 + PFR28_00718 0.82 +1.1
758,800 + PFR28_00718 0.82 +0.9
758,800 + PFR28_00718 0.82 -3.1
758,800 + PFR28_00718 0.82 +0.7
758,801 - PFR28_00718 0.82 +0.7
758,801 - PFR28_00718 0.82 +1.3
758,801 - PFR28_00718 0.82 -0.2
758,895 - -0.5
758,999 - PFR28_00719 0.11 -0.9
758,999 - PFR28_00719 0.11 +0.2
758,999 - PFR28_00719 0.11 -0.7
759,052 + PFR28_00719 0.23 +0.6
759,052 + PFR28_00719 0.23 +0.9
759,052 + PFR28_00719 0.23 +0.4
759,052 + PFR28_00719 0.23 +0.4
759,052 + PFR28_00719 0.23 -0.9
759,052 + PFR28_00719 0.23 -1.4
759,052 + PFR28_00719 0.23 +1.6
759,052 + PFR28_00719 0.23 +0.1
759,052 + PFR28_00719 0.23 +1.2
759,052 + PFR28_00719 0.23 -0.4
759,052 + PFR28_00719 0.23 +0.2
759,052 + PFR28_00719 0.23 -0.8
759,052 + PFR28_00719 0.23 -0.1
759,053 - PFR28_00719 0.23 -2.8
759,053 - PFR28_00719 0.23 +0.1
759,053 - PFR28_00719 0.23 -0.6
759,053 - PFR28_00719 0.23 -0.4
759,053 - PFR28_00719 0.23 -0.5
759,053 - PFR28_00719 0.23 +0.9
759,053 - PFR28_00719 0.23 -3.3
759,053 - PFR28_00719 0.23 -0.9
759,053 - PFR28_00719 0.23 +1.9
759,118 + PFR28_00719 0.37 -0.9
759,118 + PFR28_00719 0.37 +0.2
759,118 + PFR28_00719 0.37 +1.2
759,118 + PFR28_00719 0.37 -0.7
759,118 + PFR28_00719 0.37 +1.1
759,118 + PFR28_00719 0.37 -0.6
759,118 + PFR28_00719 0.37 +0.0
759,118 + PFR28_00719 0.37 -1.5
759,118 + PFR28_00719 0.37 -0.6
759,118 + PFR28_00719 0.37 +1.4
759,118 + PFR28_00719 0.37 +1.1
759,118 + PFR28_00719 0.37 +0.9
759,119 - PFR28_00719 0.37 -0.0
759,119 - PFR28_00719 0.37 +1.6
759,119 - PFR28_00719 0.37 +0.7
759,119 - PFR28_00719 0.37 +0.8
759,119 - PFR28_00719 0.37 -0.1
759,119 - PFR28_00719 0.37 +1.2
759,119 - PFR28_00719 0.37 +0.3
759,119 - PFR28_00719 0.37 +0.5
759,142 + PFR28_00719 0.42 -3.5
759,142 + PFR28_00719 0.42 -1.0
759,247 + PFR28_00719 0.64 +0.7
759,247 + PFR28_00719 0.64 +0.0
759,248 - PFR28_00719 0.64 +0.5
759,248 - PFR28_00719 0.64 +1.5
759,292 + PFR28_00719 0.73 +0.6
759,292 + PFR28_00719 0.73 +0.2
759,307 + PFR28_00719 0.77 -1.1
759,307 + PFR28_00719 0.77 -0.2
759,307 + PFR28_00719 0.77 +0.3
759,307 + PFR28_00719 0.77 -0.1
759,308 - PFR28_00719 0.77 -0.2
759,308 - PFR28_00719 0.77 -0.1
759,308 - PFR28_00719 0.77 -0.4
759,308 - PFR28_00719 0.77 +0.4

Or see this region's nucleotide sequence