Strain Fitness in Pseudomonas sp. RS175 around PFR28_00714

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00712 and PFR28_00713 overlap by 4 nucleotidesPFR28_00713 and PFR28_00714 are separated by 122 nucleotidesPFR28_00714 and PFR28_00715 are separated by 50 nucleotidesPFR28_00715 and PFR28_00716 are separated by 159 nucleotides PFR28_00712: PFR28_00712 - Ribonuclease D, at 753,370 to 754,503 _00712 PFR28_00713: PFR28_00713 - Protein YcgL, at 754,500 to 754,793 _00713 PFR28_00714: PFR28_00714 - Glyoxylate/hydroxypyruvate reductase A, at 754,916 to 755,848 _00714 PFR28_00715: PFR28_00715 - malonic semialdehyde reductase RutE, at 755,899 to 756,492 _00715 PFR28_00716: PFR28_00716 - hypothetical protein, at 756,652 to 757,101 _00716 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.961 kb on + strand, within PFR28_00712at 753.961 kb on + strand, within PFR28_00712at 753.962 kb on - strand, within PFR28_00712at 753.962 kb on - strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.088 kb on + strand, within PFR28_00712at 754.089 kb on - strand, within PFR28_00712at 754.089 kb on - strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.411 kb on + strandat 754.508 kb on + strandat 754.508 kb on + strandat 754.509 kb on - strandat 754.509 kb on - strandat 754.521 kb on + strandat 754.521 kb on + strandat 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.833 kb on + strandat 754.834 kb on - strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.953 kb on - strandat 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.132 kb on - strand, within PFR28_00714at 755.213 kb on + strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.334 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.564 kb on - strand, within PFR28_00714at 755.796 kb on - strandat 755.900 kb on + strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.901 kb on - strandat 755.976 kb on - strand, within PFR28_00715at 755.976 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.036 kb on - strand, within PFR28_00715at 756.099 kb on + strand, within PFR28_00715at 756.320 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.347 kb on + strand, within PFR28_00715at 756.348 kb on - strand, within PFR28_00715at 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.534 kb on + strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.535 kb on - strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.609 kb on + strandat 756.610 kb on - strandat 756.680 kb on + strandat 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.787 kb on + strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.788 kb on - strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.790 kb on + strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716at 756.791 kb on - strand, within PFR28_00716

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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753,961 + PFR28_00712 0.52 +2.0
753,961 + PFR28_00712 0.52 -0.8
753,962 - PFR28_00712 0.52 +0.9
753,962 - PFR28_00712 0.52 +0.5
754,031 + PFR28_00712 0.58 -1.3
754,031 + PFR28_00712 0.58 -0.5
754,031 + PFR28_00712 0.58 +1.4
754,031 + PFR28_00712 0.58 -0.9
754,031 + PFR28_00712 0.58 +1.2
754,031 + PFR28_00712 0.58 +0.3
754,032 - PFR28_00712 0.58 -0.5
754,032 - PFR28_00712 0.58 +0.2
754,032 - PFR28_00712 0.58 -1.9
754,032 - PFR28_00712 0.58 -0.5
754,032 - PFR28_00712 0.58 -2.0
754,032 - PFR28_00712 0.58 -0.8
754,032 - PFR28_00712 0.58 -0.5
754,088 + PFR28_00712 0.63 +1.3
754,089 - PFR28_00712 0.63 -2.1
754,089 - PFR28_00712 0.63 +0.0
754,173 + PFR28_00712 0.71 -0.9
754,173 + PFR28_00712 0.71 +0.8
754,173 + PFR28_00712 0.71 +0.1
754,174 - PFR28_00712 0.71 +1.1
754,174 - PFR28_00712 0.71 -2.5
754,174 - PFR28_00712 0.71 -0.1
754,411 + -1.7
754,508 + +1.5
754,508 + +0.3
754,509 - +1.1
754,509 - -2.7
754,521 + -0.4
754,521 + +0.3
754,548 + PFR28_00713 0.16 +0.3
754,548 + PFR28_00713 0.16 +1.0
754,548 + PFR28_00713 0.16 +0.8
754,548 + PFR28_00713 0.16 +0.2
754,548 + PFR28_00713 0.16 -2.9
754,548 + PFR28_00713 0.16 -0.5
754,548 + PFR28_00713 0.16 +0.3
754,548 + PFR28_00713 0.16 +0.7
754,548 + PFR28_00713 0.16 +0.5
754,548 + PFR28_00713 0.16 +0.2
754,548 + PFR28_00713 0.16 +0.1
754,548 + PFR28_00713 0.16 -0.5
754,548 + PFR28_00713 0.16 -0.8
754,548 + PFR28_00713 0.16 +0.2
754,549 - PFR28_00713 0.17 +2.0
754,549 - PFR28_00713 0.17 -2.2
754,549 - PFR28_00713 0.17 -3.2
754,549 - PFR28_00713 0.17 +1.2
754,549 - PFR28_00713 0.17 -0.4
754,549 - PFR28_00713 0.17 +0.6
754,549 - PFR28_00713 0.17 -1.5
754,549 - PFR28_00713 0.17 +0.1
754,549 - PFR28_00713 0.17 -0.3
754,549 - PFR28_00713 0.17 +0.4
754,549 - PFR28_00713 0.17 +0.9
754,549 - PFR28_00713 0.17 -0.7
754,549 - PFR28_00713 0.17 -0.0
754,549 - PFR28_00713 0.17 -2.7
754,554 + PFR28_00713 0.18 -0.5
754,554 + PFR28_00713 0.18 +1.3
754,554 + PFR28_00713 0.18 +1.0
754,554 + PFR28_00713 0.18 +0.4
754,554 + PFR28_00713 0.18 +0.6
754,554 + PFR28_00713 0.18 -0.9
754,554 + PFR28_00713 0.18 +1.0
754,554 + PFR28_00713 0.18 -1.1
754,555 - PFR28_00713 0.19 -0.5
754,555 - PFR28_00713 0.19 +1.5
754,555 - PFR28_00713 0.19 +1.3
754,555 - PFR28_00713 0.19 -0.5
754,555 - PFR28_00713 0.19 -1.2
754,555 - PFR28_00713 0.19 -0.3
754,555 - PFR28_00713 0.19 +0.2
754,555 - PFR28_00713 0.19 -2.2
754,555 - PFR28_00713 0.19 +0.0
754,555 - PFR28_00713 0.19 -1.0
754,555 - PFR28_00713 0.19 +1.9
754,710 + PFR28_00713 0.71 +0.9
754,710 + PFR28_00713 0.71 +0.3
754,710 + PFR28_00713 0.71 +1.3
754,710 + PFR28_00713 0.71 +0.4
754,743 + PFR28_00713 0.83 -0.5
754,743 + PFR28_00713 0.83 +0.3
754,743 + PFR28_00713 0.83 -0.1
754,744 - PFR28_00713 0.83 +0.6
754,744 - PFR28_00713 0.83 +0.3
754,744 - PFR28_00713 0.83 -0.9
754,744 - PFR28_00713 0.83 -1.3
754,744 - PFR28_00713 0.83 -0.0
754,744 - PFR28_00713 0.83 -0.4
754,833 + +1.3
754,834 - +0.1
754,952 + -0.6
754,952 + +0.4
754,952 + -0.6
754,952 + +0.2
754,952 + +1.1
754,953 - +0.0
755,131 + PFR28_00714 0.23 -0.8
755,131 + PFR28_00714 0.23 +0.9
755,131 + PFR28_00714 0.23 -3.2
755,132 - PFR28_00714 0.23 +0.7
755,213 + PFR28_00714 0.32 -0.2
755,214 - PFR28_00714 0.32 -0.6
755,214 - PFR28_00714 0.32 -0.8
755,225 + PFR28_00714 0.33 -1.6
755,225 + PFR28_00714 0.33 +1.1
755,225 + PFR28_00714 0.33 +1.2
755,225 + PFR28_00714 0.33 +0.4
755,225 + PFR28_00714 0.33 +0.1
755,225 + PFR28_00714 0.33 -0.8
755,225 + PFR28_00714 0.33 +0.5
755,225 + PFR28_00714 0.33 +0.7
755,225 + PFR28_00714 0.33 -0.2
755,225 + PFR28_00714 0.33 +0.7
755,225 + PFR28_00714 0.33 +0.0
755,225 + PFR28_00714 0.33 +0.9
755,225 + PFR28_00714 0.33 -1.4
755,225 + PFR28_00714 0.33 -1.0
755,225 + PFR28_00714 0.33 -2.5
755,225 + PFR28_00714 0.33 -2.5
755,225 + PFR28_00714 0.33 -0.2
755,225 + PFR28_00714 0.33 +1.6
755,225 + PFR28_00714 0.33 +1.0
755,226 - PFR28_00714 0.33 -0.2
755,226 - PFR28_00714 0.33 -0.2
755,226 - PFR28_00714 0.33 +0.5
755,226 - PFR28_00714 0.33 +0.8
755,226 - PFR28_00714 0.33 -1.3
755,226 - PFR28_00714 0.33 -1.1
755,226 - PFR28_00714 0.33 -0.6
755,226 - PFR28_00714 0.33 +0.4
755,226 - PFR28_00714 0.33 +0.5
755,226 - PFR28_00714 0.33 -0.7
755,226 - PFR28_00714 0.33 -0.4
755,226 - PFR28_00714 0.33 +0.2
755,226 - PFR28_00714 0.33 +2.4
755,226 - PFR28_00714 0.33 -0.5
755,226 - PFR28_00714 0.33 -0.3
755,334 + PFR28_00714 0.45 -0.2
755,396 + PFR28_00714 0.51 +0.6
755,396 + PFR28_00714 0.51 +0.6
755,396 + PFR28_00714 0.51 +0.1
755,486 + PFR28_00714 0.61 -0.0
755,486 + PFR28_00714 0.61 +1.5
755,486 + PFR28_00714 0.61 +1.2
755,486 + PFR28_00714 0.61 -1.1
755,486 + PFR28_00714 0.61 -0.6
755,486 + PFR28_00714 0.61 -1.1
755,487 - PFR28_00714 0.61 +1.6
755,487 - PFR28_00714 0.61 +0.2
755,487 - PFR28_00714 0.61 -1.0
755,487 - PFR28_00714 0.61 +0.3
755,487 - PFR28_00714 0.61 -0.0
755,487 - PFR28_00714 0.61 +0.0
755,487 - PFR28_00714 0.61 +0.4
755,487 - PFR28_00714 0.61 +0.3
755,487 - PFR28_00714 0.61 -1.0
755,487 - PFR28_00714 0.61 +1.5
755,531 + PFR28_00714 0.66 +0.3
755,531 + PFR28_00714 0.66 +0.5
755,531 + PFR28_00714 0.66 +0.1
755,531 + PFR28_00714 0.66 -0.0
755,532 - PFR28_00714 0.66 -0.3
755,532 - PFR28_00714 0.66 +1.5
755,532 - PFR28_00714 0.66 +1.2
755,532 - PFR28_00714 0.66 -1.5
755,564 - PFR28_00714 0.69 +0.5
755,796 - +0.6
755,900 + -0.6
755,901 - -0.5
755,901 - -1.0
755,901 - -0.6
755,976 - PFR28_00715 0.13 +0.8
755,976 - PFR28_00715 0.13 -1.4
756,036 - PFR28_00715 0.23 -0.2
756,036 - PFR28_00715 0.23 -1.1
756,099 + PFR28_00715 0.34 +0.5
756,320 + PFR28_00715 0.71 +0.2
756,347 + PFR28_00715 0.75 -2.9
756,347 + PFR28_00715 0.75 -0.4
756,348 - PFR28_00715 0.76 -0.6
756,534 + +1.5
756,534 + -1.3
756,534 + -0.3
756,534 + -1.4
756,534 + -0.1
756,535 - +0.3
756,535 - +0.9
756,535 - -0.1
756,535 - +0.6
756,535 - -0.6
756,535 - +1.0
756,535 - +1.2
756,535 - +0.2
756,535 - +0.0
756,535 - +1.4
756,609 + +1.6
756,609 + -0.3
756,609 + +0.3
756,610 - -2.2
756,680 + -0.1
756,787 + PFR28_00716 0.30 -2.0
756,787 + PFR28_00716 0.30 -1.0
756,787 + PFR28_00716 0.30 -0.5
756,787 + PFR28_00716 0.30 +0.6
756,788 - PFR28_00716 0.30 +0.9
756,788 - PFR28_00716 0.30 -2.2
756,790 + PFR28_00716 0.31 -2.2
756,790 + PFR28_00716 0.31 -2.1
756,791 - PFR28_00716 0.31 +0.0
756,791 - PFR28_00716 0.31 -2.0
756,791 - PFR28_00716 0.31 +0.2
756,791 - PFR28_00716 0.31 -1.4
756,791 - PFR28_00716 0.31 -1.1

Or see this region's nucleotide sequence