Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18520

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18515 and ABIE41_RS18520 are separated by 155 nucleotidesABIE41_RS18520 and ABIE41_RS18525 are separated by 55 nucleotidesABIE41_RS18525 and ABIE41_RS18530 are separated by 48 nucleotides ABIE41_RS18515: ABIE41_RS18515 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,811,329 to 3,812,363 _RS18515 ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922 _RS18520 ABIE41_RS18525: ABIE41_RS18525 - GntR family transcriptional regulator, at 3,813,978 to 3,814,643 _RS18525 ABIE41_RS18530: ABIE41_RS18530 - mannonate dehydratase, at 3,814,692 to 3,815,885 _RS18530 Position (kb) 3812 3813 3814Strain fitness (log2 ratio) -2 -1 0 1at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.546 kb on + strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.547 kb on - strand, within ABIE41_RS18515at 3811.667 kb on + strand, within ABIE41_RS18515at 3811.668 kb on - strand, within ABIE41_RS18515at 3811.942 kb on + strand, within ABIE41_RS18515at 3811.942 kb on + strand, within ABIE41_RS18515at 3811.943 kb on - strand, within ABIE41_RS18515at 3811.943 kb on - strand, within ABIE41_RS18515at 3811.943 kb on - strand, within ABIE41_RS18515at 3812.240 kb on - strand, within ABIE41_RS18515at 3812.366 kb on + strandat 3812.367 kb on - strandat 3812.367 kb on - strandat 3812.367 kb on - strandat 3812.410 kb on - strandat 3812.538 kb on - strandat 3812.538 kb on - strandat 3812.538 kb on - strandat 3812.600 kb on + strandat 3812.600 kb on + strandat 3812.600 kb on + strandat 3812.600 kb on + strandat 3812.601 kb on - strandat 3813.069 kb on - strand, within ABIE41_RS18520at 3813.530 kb on + strand, within ABIE41_RS18520at 3813.530 kb on + strand, within ABIE41_RS18520at 3813.531 kb on - strand, within ABIE41_RS18520at 3813.531 kb on - strand, within ABIE41_RS18520at 3813.618 kb on - strand, within ABIE41_RS18520at 3813.618 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3814.005 kb on - strandat 3814.356 kb on + strand, within ABIE41_RS18525at 3814.356 kb on + strand, within ABIE41_RS18525at 3814.381 kb on - strand, within ABIE41_RS18525

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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3,811,546 + ABIE41_RS18515 0.21 +0.4
3,811,546 + ABIE41_RS18515 0.21 -0.2
3,811,546 + ABIE41_RS18515 0.21 -0.9
3,811,546 + ABIE41_RS18515 0.21 +0.0
3,811,546 + ABIE41_RS18515 0.21 -0.7
3,811,546 + ABIE41_RS18515 0.21 +0.3
3,811,546 + ABIE41_RS18515 0.21 +0.9
3,811,546 + ABIE41_RS18515 0.21 +0.0
3,811,547 - ABIE41_RS18515 0.21 +0.5
3,811,547 - ABIE41_RS18515 0.21 -0.0
3,811,547 - ABIE41_RS18515 0.21 -2.3
3,811,547 - ABIE41_RS18515 0.21 -0.4
3,811,547 - ABIE41_RS18515 0.21 -0.4
3,811,547 - ABIE41_RS18515 0.21 -0.7
3,811,547 - ABIE41_RS18515 0.21 -0.6
3,811,547 - ABIE41_RS18515 0.21 +0.5
3,811,547 - ABIE41_RS18515 0.21 -0.2
3,811,547 - ABIE41_RS18515 0.21 -0.2
3,811,547 - ABIE41_RS18515 0.21 +0.1
3,811,547 - ABIE41_RS18515 0.21 +0.2
3,811,667 + ABIE41_RS18515 0.33 +0.1
3,811,668 - ABIE41_RS18515 0.33 -0.5
3,811,942 + ABIE41_RS18515 0.59 +0.1
3,811,942 + ABIE41_RS18515 0.59 -0.3
3,811,943 - ABIE41_RS18515 0.59 +0.3
3,811,943 - ABIE41_RS18515 0.59 +0.1
3,811,943 - ABIE41_RS18515 0.59 +1.0
3,812,240 - ABIE41_RS18515 0.88 +0.8
3,812,366 + +0.3
3,812,367 - -0.1
3,812,367 - -0.2
3,812,367 - -0.1
3,812,410 - -0.2
3,812,538 - -0.3
3,812,538 - +0.8
3,812,538 - +0.7
3,812,600 + -0.8
3,812,600 + -0.5
3,812,600 + +0.1
3,812,600 + -0.1
3,812,601 - +0.7
3,813,069 - ABIE41_RS18520 0.39 -0.5
3,813,530 + ABIE41_RS18520 0.72 -1.3
3,813,530 + ABIE41_RS18520 0.72 +0.0
3,813,531 - ABIE41_RS18520 0.72 -0.0
3,813,531 - ABIE41_RS18520 0.72 -0.3
3,813,618 - ABIE41_RS18520 0.78 -1.0
3,813,618 - ABIE41_RS18520 0.78 +1.2
3,813,771 - ABIE41_RS18520 0.89 +1.4
3,813,771 - ABIE41_RS18520 0.89 +0.1
3,813,771 - ABIE41_RS18520 0.89 -0.2
3,814,005 - +1.0
3,814,356 + ABIE41_RS18525 0.57 +1.1
3,814,356 + ABIE41_RS18525 0.57 +0.1
3,814,381 - ABIE41_RS18525 0.61 +1.1

Or see this region's nucleotide sequence