Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18515 and ABIE41_RS18520 are separated by 155 nucleotides ABIE41_RS18520 and ABIE41_RS18525 are separated by 55 nucleotides ABIE41_RS18525 and ABIE41_RS18530 are separated by 48 nucleotides
ABIE41_RS18515: ABIE41_RS18515 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,811,329 to 3,812,363
_RS18515
ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922
_RS18520
ABIE41_RS18525: ABIE41_RS18525 - GntR family transcriptional regulator, at 3,813,978 to 3,814,643
_RS18525
ABIE41_RS18530: ABIE41_RS18530 - mannonate dehydratase, at 3,814,692 to 3,815,885
_RS18530
Position (kb)
3812
3813
3814 Strain fitness (log2 ratio)
-2
-1
0
1 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.667 kb on + strand, within ABIE41_RS18515 at 3811.668 kb on - strand, within ABIE41_RS18515 at 3811.942 kb on + strand, within ABIE41_RS18515 at 3811.942 kb on + strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3812.240 kb on - strand, within ABIE41_RS18515 at 3812.366 kb on + strand at 3812.367 kb on - strand at 3812.367 kb on - strand at 3812.367 kb on - strand at 3812.410 kb on - strand at 3812.538 kb on - strand at 3812.538 kb on - strand at 3812.538 kb on - strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.601 kb on - strand at 3813.069 kb on - strand, within ABIE41_RS18520 at 3813.530 kb on + strand, within ABIE41_RS18520 at 3813.530 kb on + strand, within ABIE41_RS18520 at 3813.531 kb on - strand, within ABIE41_RS18520 at 3813.531 kb on - strand, within ABIE41_RS18520 at 3813.618 kb on - strand, within ABIE41_RS18520 at 3813.618 kb on - strand, within ABIE41_RS18520 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3814.005 kb on - strand at 3814.356 kb on + strand, within ABIE41_RS18525 at 3814.356 kb on + strand, within ABIE41_RS18525 at 3814.381 kb on - strand, within ABIE41_RS18525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 3,811,546 + ABIE41_RS18515 0.21 +0.4 3,811,546 + ABIE41_RS18515 0.21 -0.2 3,811,546 + ABIE41_RS18515 0.21 -0.9 3,811,546 + ABIE41_RS18515 0.21 +0.0 3,811,546 + ABIE41_RS18515 0.21 -0.7 3,811,546 + ABIE41_RS18515 0.21 +0.3 3,811,546 + ABIE41_RS18515 0.21 +0.9 3,811,546 + ABIE41_RS18515 0.21 +0.0 3,811,547 - ABIE41_RS18515 0.21 +0.5 3,811,547 - ABIE41_RS18515 0.21 -0.0 3,811,547 - ABIE41_RS18515 0.21 -2.3 3,811,547 - ABIE41_RS18515 0.21 -0.4 3,811,547 - ABIE41_RS18515 0.21 -0.4 3,811,547 - ABIE41_RS18515 0.21 -0.7 3,811,547 - ABIE41_RS18515 0.21 -0.6 3,811,547 - ABIE41_RS18515 0.21 +0.5 3,811,547 - ABIE41_RS18515 0.21 -0.2 3,811,547 - ABIE41_RS18515 0.21 -0.2 3,811,547 - ABIE41_RS18515 0.21 +0.1 3,811,547 - ABIE41_RS18515 0.21 +0.2 3,811,667 + ABIE41_RS18515 0.33 +0.1 3,811,668 - ABIE41_RS18515 0.33 -0.5 3,811,942 + ABIE41_RS18515 0.59 +0.1 3,811,942 + ABIE41_RS18515 0.59 -0.3 3,811,943 - ABIE41_RS18515 0.59 +0.3 3,811,943 - ABIE41_RS18515 0.59 +0.1 3,811,943 - ABIE41_RS18515 0.59 +1.0 3,812,240 - ABIE41_RS18515 0.88 +0.8 3,812,366 + +0.3 3,812,367 - -0.1 3,812,367 - -0.2 3,812,367 - -0.1 3,812,410 - -0.2 3,812,538 - -0.3 3,812,538 - +0.8 3,812,538 - +0.7 3,812,600 + -0.8 3,812,600 + -0.5 3,812,600 + +0.1 3,812,600 + -0.1 3,812,601 - +0.7 3,813,069 - ABIE41_RS18520 0.39 -0.5 3,813,530 + ABIE41_RS18520 0.72 -1.3 3,813,530 + ABIE41_RS18520 0.72 +0.0 3,813,531 - ABIE41_RS18520 0.72 -0.0 3,813,531 - ABIE41_RS18520 0.72 -0.3 3,813,618 - ABIE41_RS18520 0.78 -1.0 3,813,618 - ABIE41_RS18520 0.78 +1.2 3,813,771 - ABIE41_RS18520 0.89 +1.4 3,813,771 - ABIE41_RS18520 0.89 +0.1 3,813,771 - ABIE41_RS18520 0.89 -0.2 3,814,005 - +1.0 3,814,356 + ABIE41_RS18525 0.57 +1.1 3,814,356 + ABIE41_RS18525 0.57 +0.1 3,814,381 - ABIE41_RS18525 0.61 +1.1
Or see this region's nucleotide sequence