Experiment: R2A with 3-octanone 5.31033333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18510 and ABIE41_RS18515 are separated by 68 nucleotides ABIE41_RS18515 and ABIE41_RS18520 are separated by 155 nucleotides
ABIE41_RS18510: ABIE41_RS18510 - tripartite tricarboxylate transporter substrate-binding protein, at 3,810,265 to 3,811,260
_RS18510
ABIE41_RS18515: ABIE41_RS18515 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,811,329 to 3,812,363
_RS18515
ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922
_RS18520
Position (kb)
3811
3812
3813 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3810.434 kb on + strand, within ABIE41_RS18510 at 3810.434 kb on + strand, within ABIE41_RS18510 at 3810.434 kb on + strand, within ABIE41_RS18510 at 3810.722 kb on + strand, within ABIE41_RS18510 at 3810.722 kb on + strand, within ABIE41_RS18510 at 3810.722 kb on + strand, within ABIE41_RS18510 at 3810.723 kb on - strand, within ABIE41_RS18510 at 3810.723 kb on - strand, within ABIE41_RS18510 at 3810.723 kb on - strand, within ABIE41_RS18510 at 3810.723 kb on - strand, within ABIE41_RS18510 at 3810.723 kb on - strand, within ABIE41_RS18510 at 3810.839 kb on + strand, within ABIE41_RS18510 at 3810.840 kb on - strand, within ABIE41_RS18510 at 3810.840 kb on - strand, within ABIE41_RS18510 at 3810.857 kb on + strand, within ABIE41_RS18510 at 3810.858 kb on - strand, within ABIE41_RS18510 at 3810.935 kb on + strand, within ABIE41_RS18510 at 3810.936 kb on - strand, within ABIE41_RS18510 at 3810.936 kb on - strand, within ABIE41_RS18510 at 3810.936 kb on - strand, within ABIE41_RS18510 at 3810.954 kb on - strand, within ABIE41_RS18510 at 3810.966 kb on - strand, within ABIE41_RS18510 at 3811.026 kb on + strand, within ABIE41_RS18510 at 3811.027 kb on - strand, within ABIE41_RS18510 at 3811.028 kb on + strand, within ABIE41_RS18510 at 3811.028 kb on + strand, within ABIE41_RS18510 at 3811.028 kb on + strand, within ABIE41_RS18510 at 3811.028 kb on + strand, within ABIE41_RS18510 at 3811.029 kb on - strand, within ABIE41_RS18510 at 3811.029 kb on - strand, within ABIE41_RS18510 at 3811.029 kb on - strand, within ABIE41_RS18510 at 3811.029 kb on - strand, within ABIE41_RS18510 at 3811.438 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.546 kb on + strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.547 kb on - strand, within ABIE41_RS18515 at 3811.667 kb on + strand, within ABIE41_RS18515 at 3811.668 kb on - strand, within ABIE41_RS18515 at 3811.942 kb on + strand, within ABIE41_RS18515 at 3811.942 kb on + strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3811.943 kb on - strand, within ABIE41_RS18515 at 3812.240 kb on - strand, within ABIE41_RS18515 at 3812.366 kb on + strand at 3812.367 kb on - strand at 3812.367 kb on - strand at 3812.367 kb on - strand at 3812.410 kb on - strand at 3812.538 kb on - strand at 3812.538 kb on - strand at 3812.538 kb on - strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.600 kb on + strand at 3812.601 kb on - strand at 3813.069 kb on - strand, within ABIE41_RS18520
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM remove 3,810,434 + ABIE41_RS18510 0.17 -0.3 3,810,434 + ABIE41_RS18510 0.17 +0.7 3,810,434 + ABIE41_RS18510 0.17 +0.4 3,810,722 + ABIE41_RS18510 0.46 -1.9 3,810,722 + ABIE41_RS18510 0.46 +0.5 3,810,722 + ABIE41_RS18510 0.46 +0.2 3,810,723 - ABIE41_RS18510 0.46 -0.0 3,810,723 - ABIE41_RS18510 0.46 +1.9 3,810,723 - ABIE41_RS18510 0.46 -0.2 3,810,723 - ABIE41_RS18510 0.46 -0.3 3,810,723 - ABIE41_RS18510 0.46 -0.4 3,810,839 + ABIE41_RS18510 0.58 -0.0 3,810,840 - ABIE41_RS18510 0.58 -0.4 3,810,840 - ABIE41_RS18510 0.58 -0.4 3,810,857 + ABIE41_RS18510 0.59 +0.8 3,810,858 - ABIE41_RS18510 0.60 -1.2 3,810,935 + ABIE41_RS18510 0.67 -0.1 3,810,936 - ABIE41_RS18510 0.67 -0.6 3,810,936 - ABIE41_RS18510 0.67 -1.1 3,810,936 - ABIE41_RS18510 0.67 -0.0 3,810,954 - ABIE41_RS18510 0.69 +1.6 3,810,966 - ABIE41_RS18510 0.70 -0.1 3,811,026 + ABIE41_RS18510 0.76 +0.5 3,811,027 - ABIE41_RS18510 0.77 +0.1 3,811,028 + ABIE41_RS18510 0.77 +0.0 3,811,028 + ABIE41_RS18510 0.77 -0.2 3,811,028 + ABIE41_RS18510 0.77 +0.1 3,811,028 + ABIE41_RS18510 0.77 +0.1 3,811,029 - ABIE41_RS18510 0.77 +0.1 3,811,029 - ABIE41_RS18510 0.77 +1.3 3,811,029 - ABIE41_RS18510 0.77 -0.6 3,811,029 - ABIE41_RS18510 0.77 -0.1 3,811,438 + ABIE41_RS18515 0.11 +0.4 3,811,546 + ABIE41_RS18515 0.21 +0.4 3,811,546 + ABIE41_RS18515 0.21 -0.2 3,811,546 + ABIE41_RS18515 0.21 -0.9 3,811,546 + ABIE41_RS18515 0.21 +0.0 3,811,546 + ABIE41_RS18515 0.21 -0.7 3,811,546 + ABIE41_RS18515 0.21 +0.3 3,811,546 + ABIE41_RS18515 0.21 +0.9 3,811,546 + ABIE41_RS18515 0.21 +0.0 3,811,547 - ABIE41_RS18515 0.21 +0.5 3,811,547 - ABIE41_RS18515 0.21 -0.0 3,811,547 - ABIE41_RS18515 0.21 -2.3 3,811,547 - ABIE41_RS18515 0.21 -0.4 3,811,547 - ABIE41_RS18515 0.21 -0.4 3,811,547 - ABIE41_RS18515 0.21 -0.7 3,811,547 - ABIE41_RS18515 0.21 -0.6 3,811,547 - ABIE41_RS18515 0.21 +0.5 3,811,547 - ABIE41_RS18515 0.21 -0.2 3,811,547 - ABIE41_RS18515 0.21 -0.2 3,811,547 - ABIE41_RS18515 0.21 +0.1 3,811,547 - ABIE41_RS18515 0.21 +0.2 3,811,667 + ABIE41_RS18515 0.33 +0.1 3,811,668 - ABIE41_RS18515 0.33 -0.5 3,811,942 + ABIE41_RS18515 0.59 +0.1 3,811,942 + ABIE41_RS18515 0.59 -0.3 3,811,943 - ABIE41_RS18515 0.59 +0.3 3,811,943 - ABIE41_RS18515 0.59 +0.1 3,811,943 - ABIE41_RS18515 0.59 +1.0 3,812,240 - ABIE41_RS18515 0.88 +0.8 3,812,366 + +0.3 3,812,367 - -0.1 3,812,367 - -0.2 3,812,367 - -0.1 3,812,410 - -0.2 3,812,538 - -0.3 3,812,538 - +0.8 3,812,538 - +0.7 3,812,600 + -0.8 3,812,600 + -0.5 3,812,600 + +0.1 3,812,600 + -0.1 3,812,601 - +0.7 3,813,069 - ABIE41_RS18520 0.39 -0.5
Or see this region's nucleotide sequence