Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16800

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16795 and ABIE41_RS16800 are separated by 198 nucleotidesABIE41_RS16800 and ABIE41_RS16805 are separated by 4 nucleotidesABIE41_RS16805 and ABIE41_RS16810 are separated by 18 nucleotides ABIE41_RS16795: ABIE41_RS16795 - tRNA dihydrouridine synthase DusB, at 3,463,199 to 3,464,183 _RS16795 ABIE41_RS16800: ABIE41_RS16800 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,464,382 to 3,465,593 _RS16800 ABIE41_RS16805: ABIE41_RS16805 - CinA family protein, at 3,465,598 to 3,466,089 _RS16805 ABIE41_RS16810: ABIE41_RS16810 - type II toxin-antitoxin system RatA family toxin, at 3,466,108 to 3,466,587 _RS16810 Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3463.408 kb on - strand, within ABIE41_RS16795at 3463.663 kb on + strand, within ABIE41_RS16795at 3463.663 kb on + strand, within ABIE41_RS16795at 3463.663 kb on + strand, within ABIE41_RS16795at 3464.229 kb on + strandat 3464.230 kb on - strandat 3464.230 kb on - strandat 3464.274 kb on + strandat 3464.351 kb on + strandat 3464.352 kb on - strandat 3464.352 kb on - strandat 3465.763 kb on + strand, within ABIE41_RS16805at 3465.763 kb on + strand, within ABIE41_RS16805at 3465.764 kb on - strand, within ABIE41_RS16805at 3466.149 kb on - strandat 3466.250 kb on + strand, within ABIE41_RS16810at 3466.250 kb on + strand, within ABIE41_RS16810at 3466.251 kb on - strand, within ABIE41_RS16810at 3466.251 kb on - strand, within ABIE41_RS16810at 3466.337 kb on + strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.410 kb on - strand, within ABIE41_RS16810at 3466.508 kb on + strand, within ABIE41_RS16810at 3466.509 kb on - strand, within ABIE41_RS16810

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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3,463,408 - ABIE41_RS16795 0.21 -0.7
3,463,663 + ABIE41_RS16795 0.47 -0.3
3,463,663 + ABIE41_RS16795 0.47 +0.1
3,463,663 + ABIE41_RS16795 0.47 +0.2
3,464,229 + +0.2
3,464,230 - +0.2
3,464,230 - +0.0
3,464,274 + +1.9
3,464,351 + +0.8
3,464,352 - -1.5
3,464,352 - -0.9
3,465,763 + ABIE41_RS16805 0.34 +2.2
3,465,763 + ABIE41_RS16805 0.34 -1.4
3,465,764 - ABIE41_RS16805 0.34 -1.4
3,466,149 - -0.3
3,466,250 + ABIE41_RS16810 0.30 -1.4
3,466,250 + ABIE41_RS16810 0.30 -1.5
3,466,251 - ABIE41_RS16810 0.30 -2.0
3,466,251 - ABIE41_RS16810 0.30 -0.9
3,466,337 + ABIE41_RS16810 0.48 -3.4
3,466,338 - ABIE41_RS16810 0.48 -2.8
3,466,338 - ABIE41_RS16810 0.48 -3.0
3,466,338 - ABIE41_RS16810 0.48 -2.6
3,466,338 - ABIE41_RS16810 0.48 -1.7
3,466,410 - ABIE41_RS16810 0.63 +0.8
3,466,508 + ABIE41_RS16810 0.83 +0.3
3,466,509 - ABIE41_RS16810 0.84 -2.0

Or see this region's nucleotide sequence