Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13795

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13785 and ABIE41_RS13790 are separated by 102 nucleotidesABIE41_RS13790 and ABIE41_RS13795 are separated by 90 nucleotidesABIE41_RS13795 and ABIE41_RS13800 are separated by 86 nucleotides ABIE41_RS13785: ABIE41_RS13785 - EAL domain-containing protein, at 2,826,428 to 2,828,647 _RS13785 ABIE41_RS13790: ABIE41_RS13790 - proteasome-type protease, at 2,828,750 to 2,829,499 _RS13790 ABIE41_RS13795: ABIE41_RS13795 - transglutaminase family protein, at 2,829,590 to 2,830,417 _RS13795 ABIE41_RS13800: ABIE41_RS13800 - alpha-E domain-containing protein, at 2,830,504 to 2,831,445 _RS13800 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -2 -1 0 1 2at 2828.690 kb on + strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.732 kb on + strandat 2828.732 kb on + strandat 2828.733 kb on - strandat 2828.733 kb on - strandat 2828.841 kb on + strand, within ABIE41_RS13790at 2828.841 kb on + strand, within ABIE41_RS13790at 2828.841 kb on + strand, within ABIE41_RS13790at 2828.842 kb on - strand, within ABIE41_RS13790at 2828.985 kb on + strand, within ABIE41_RS13790at 2829.033 kb on + strand, within ABIE41_RS13790at 2829.034 kb on - strand, within ABIE41_RS13790at 2829.099 kb on + strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.492 kb on + strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.696 kb on + strand, within ABIE41_RS13795at 2829.697 kb on - strand, within ABIE41_RS13795at 2829.775 kb on - strand, within ABIE41_RS13795at 2829.775 kb on - strand, within ABIE41_RS13795at 2829.846 kb on + strand, within ABIE41_RS13795at 2829.847 kb on - strand, within ABIE41_RS13795at 2829.847 kb on - strand, within ABIE41_RS13795at 2829.858 kb on + strand, within ABIE41_RS13795at 2829.858 kb on + strand, within ABIE41_RS13795at 2829.858 kb on + strand, within ABIE41_RS13795at 2829.859 kb on - strand, within ABIE41_RS13795at 2829.902 kb on - strand, within ABIE41_RS13795at 2829.902 kb on - strand, within ABIE41_RS13795at 2830.234 kb on + strand, within ABIE41_RS13795at 2830.235 kb on - strand, within ABIE41_RS13795at 2830.235 kb on - strand, within ABIE41_RS13795at 2830.380 kb on + strandat 2830.386 kb on + strandat 2830.514 kb on + strandat 2830.514 kb on + strandat 2830.514 kb on + strandat 2830.515 kb on - strandat 2830.671 kb on - strand, within ABIE41_RS13800at 2830.713 kb on - strand, within ABIE41_RS13800at 2830.793 kb on + strand, within ABIE41_RS13800at 2830.805 kb on + strand, within ABIE41_RS13800at 2830.805 kb on + strand, within ABIE41_RS13800at 2830.853 kb on + strand, within ABIE41_RS13800at 2830.853 kb on + strand, within ABIE41_RS13800at 2830.854 kb on - strand, within ABIE41_RS13800at 2830.901 kb on + strand, within ABIE41_RS13800at 2830.946 kb on + strand, within ABIE41_RS13800at 2830.946 kb on + strand, within ABIE41_RS13800at 2830.947 kb on - strand, within ABIE41_RS13800at 2830.947 kb on - strand, within ABIE41_RS13800at 2830.947 kb on - strand, within ABIE41_RS13800at 2830.947 kb on - strand, within ABIE41_RS13800at 2830.947 kb on - strand, within ABIE41_RS13800at 2831.258 kb on + strand, within ABIE41_RS13800at 2831.258 kb on + strand, within ABIE41_RS13800at 2831.259 kb on - strand, within ABIE41_RS13800at 2831.259 kb on - strand, within ABIE41_RS13800at 2831.331 kb on - strand, within ABIE41_RS13800at 2831.384 kb on + strandat 2831.384 kb on + strandat 2831.385 kb on - strandat 2831.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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2,828,690 + -0.0
2,828,691 - +0.4
2,828,691 - -0.0
2,828,691 - +0.1
2,828,691 - -0.1
2,828,691 - -0.0
2,828,732 + +0.3
2,828,732 + +0.7
2,828,733 - +1.1
2,828,733 - -0.8
2,828,841 + ABIE41_RS13790 0.12 +1.7
2,828,841 + ABIE41_RS13790 0.12 -0.0
2,828,841 + ABIE41_RS13790 0.12 +1.2
2,828,842 - ABIE41_RS13790 0.12 -0.6
2,828,985 + ABIE41_RS13790 0.31 +0.2
2,829,033 + ABIE41_RS13790 0.38 +1.0
2,829,034 - ABIE41_RS13790 0.38 -0.0
2,829,099 + ABIE41_RS13790 0.47 -0.2
2,829,100 - ABIE41_RS13790 0.47 +1.0
2,829,100 - ABIE41_RS13790 0.47 +0.2
2,829,100 - ABIE41_RS13790 0.47 +1.2
2,829,492 + +0.6
2,829,493 - -0.4
2,829,493 - +1.1
2,829,493 - +0.4
2,829,493 - -0.7
2,829,493 - +1.4
2,829,493 - +1.1
2,829,696 + ABIE41_RS13795 0.13 +1.9
2,829,697 - ABIE41_RS13795 0.13 +0.5
2,829,775 - ABIE41_RS13795 0.22 +1.1
2,829,775 - ABIE41_RS13795 0.22 +0.1
2,829,846 + ABIE41_RS13795 0.31 -1.3
2,829,847 - ABIE41_RS13795 0.31 -0.4
2,829,847 - ABIE41_RS13795 0.31 -0.7
2,829,858 + ABIE41_RS13795 0.32 -0.3
2,829,858 + ABIE41_RS13795 0.32 -0.1
2,829,858 + ABIE41_RS13795 0.32 +0.6
2,829,859 - ABIE41_RS13795 0.32 +1.4
2,829,902 - ABIE41_RS13795 0.38 -0.7
2,829,902 - ABIE41_RS13795 0.38 +0.7
2,830,234 + ABIE41_RS13795 0.78 -0.2
2,830,235 - ABIE41_RS13795 0.78 -0.4
2,830,235 - ABIE41_RS13795 0.78 -0.2
2,830,380 + -0.5
2,830,386 + -0.7
2,830,514 + +0.6
2,830,514 + +0.2
2,830,514 + +1.6
2,830,515 - -0.0
2,830,671 - ABIE41_RS13800 0.18 -0.1
2,830,713 - ABIE41_RS13800 0.22 +0.8
2,830,793 + ABIE41_RS13800 0.31 +0.8
2,830,805 + ABIE41_RS13800 0.32 +0.2
2,830,805 + ABIE41_RS13800 0.32 +0.1
2,830,853 + ABIE41_RS13800 0.37 +0.0
2,830,853 + ABIE41_RS13800 0.37 -0.5
2,830,854 - ABIE41_RS13800 0.37 -0.8
2,830,901 + ABIE41_RS13800 0.42 -0.3
2,830,946 + ABIE41_RS13800 0.47 -0.0
2,830,946 + ABIE41_RS13800 0.47 -0.3
2,830,947 - ABIE41_RS13800 0.47 -0.3
2,830,947 - ABIE41_RS13800 0.47 -0.5
2,830,947 - ABIE41_RS13800 0.47 -1.8
2,830,947 - ABIE41_RS13800 0.47 +0.4
2,830,947 - ABIE41_RS13800 0.47 -0.2
2,831,258 + ABIE41_RS13800 0.80 -0.4
2,831,258 + ABIE41_RS13800 0.80 +0.2
2,831,259 - ABIE41_RS13800 0.80 +0.4
2,831,259 - ABIE41_RS13800 0.80 +1.0
2,831,331 - ABIE41_RS13800 0.88 +1.0
2,831,384 + +0.6
2,831,384 + -0.4
2,831,385 - -0.6
2,831,417 + -0.4

Or see this region's nucleotide sequence