Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05390

Experiment: R2A with 3-octanone 5.31033333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05380 and ABIE41_RS05385 are separated by 29 nucleotidesABIE41_RS05385 and ABIE41_RS05390 overlap by 4 nucleotidesABIE41_RS05390 and ABIE41_RS05395 are separated by 162 nucleotides ABIE41_RS05380: ABIE41_RS05380 - MotB family protein, at 1,114,034 to 1,115,269 _RS05380 ABIE41_RS05385: ABIE41_RS05385 - hypothetical protein, at 1,115,299 to 1,115,964 _RS05385 ABIE41_RS05390: ABIE41_RS05390 - flagellar basal-body MS-ring/collar protein FliF, at 1,115,961 to 1,117,586 _RS05390 ABIE41_RS05395: ABIE41_RS05395 - flagellin, at 1,117,749 to 1,119,002 _RS05395 Position (kb) 1115 1116 1117 1118Strain fitness (log2 ratio) -1 0 1 2 3at 1115.085 kb on + strand, within ABIE41_RS05380at 1115.086 kb on - strand, within ABIE41_RS05380at 1115.798 kb on + strand, within ABIE41_RS05385at 1116.532 kb on + strand, within ABIE41_RS05390at 1116.533 kb on - strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.575 kb on - strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.833 kb on - strand, within ABIE41_RS05390at 1117.258 kb on + strand, within ABIE41_RS05390at 1117.259 kb on - strand, within ABIE41_RS05390at 1117.338 kb on + strand, within ABIE41_RS05390at 1117.338 kb on + strand, within ABIE41_RS05390at 1117.432 kb on + strandat 1117.465 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.570 kb on + strandat 1117.571 kb on - strandat 1117.571 kb on - strandat 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.017 kb on + strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.018 kb on - strand, within ABIE41_RS05395at 1118.110 kb on + strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.111 kb on - strand, within ABIE41_RS05395at 1118.118 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.119 kb on + strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.120 kb on - strand, within ABIE41_RS05395at 1118.480 kb on - strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.31033333333333 mM
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1,115,085 + ABIE41_RS05380 0.85 +0.4
1,115,086 - ABIE41_RS05380 0.85 +1.4
1,115,798 + ABIE41_RS05385 0.75 -1.1
1,116,532 + ABIE41_RS05390 0.35 +1.3
1,116,533 - ABIE41_RS05390 0.35 -0.7
1,116,574 + ABIE41_RS05390 0.38 -0.3
1,116,574 + ABIE41_RS05390 0.38 +0.3
1,116,574 + ABIE41_RS05390 0.38 +0.1
1,116,575 - ABIE41_RS05390 0.38 -0.0
1,116,788 + ABIE41_RS05390 0.51 +0.1
1,116,788 + ABIE41_RS05390 0.51 +0.6
1,116,788 + ABIE41_RS05390 0.51 -0.4
1,116,789 - ABIE41_RS05390 0.51 -0.9
1,116,789 - ABIE41_RS05390 0.51 +3.7
1,116,833 - ABIE41_RS05390 0.54 -0.1
1,117,258 + ABIE41_RS05390 0.80 -1.1
1,117,259 - ABIE41_RS05390 0.80 +0.8
1,117,338 + ABIE41_RS05390 0.85 -0.0
1,117,338 + ABIE41_RS05390 0.85 +0.1
1,117,432 + -0.7
1,117,465 + +0.1
1,117,570 + +0.5
1,117,570 + -0.1
1,117,570 + +0.1
1,117,570 + +0.6
1,117,571 - +0.5
1,117,571 - +2.7
1,118,017 + ABIE41_RS05395 0.21 +0.2
1,118,017 + ABIE41_RS05395 0.21 -0.2
1,118,017 + ABIE41_RS05395 0.21 -0.1
1,118,017 + ABIE41_RS05395 0.21 +0.1
1,118,017 + ABIE41_RS05395 0.21 +0.1
1,118,017 + ABIE41_RS05395 0.21 -0.2
1,118,017 + ABIE41_RS05395 0.21 +0.5
1,118,017 + ABIE41_RS05395 0.21 +0.3
1,118,018 - ABIE41_RS05395 0.21 +0.1
1,118,018 - ABIE41_RS05395 0.21 -0.2
1,118,018 - ABIE41_RS05395 0.21 +0.2
1,118,018 - ABIE41_RS05395 0.21 +0.2
1,118,018 - ABIE41_RS05395 0.21 -0.2
1,118,018 - ABIE41_RS05395 0.21 -0.2
1,118,018 - ABIE41_RS05395 0.21 +0.2
1,118,018 - ABIE41_RS05395 0.21 +0.2
1,118,110 + ABIE41_RS05395 0.29 +0.2
1,118,111 - ABIE41_RS05395 0.29 +0.4
1,118,111 - ABIE41_RS05395 0.29 -0.7
1,118,111 - ABIE41_RS05395 0.29 -0.7
1,118,111 - ABIE41_RS05395 0.29 -0.2
1,118,118 + ABIE41_RS05395 0.29 +0.4
1,118,119 + ABIE41_RS05395 0.30 -0.4
1,118,119 + ABIE41_RS05395 0.30 -0.1
1,118,119 + ABIE41_RS05395 0.30 +0.1
1,118,119 + ABIE41_RS05395 0.30 +1.1
1,118,119 + ABIE41_RS05395 0.30 -0.4
1,118,119 + ABIE41_RS05395 0.30 -0.3
1,118,119 + ABIE41_RS05395 0.30 +0.9
1,118,119 + ABIE41_RS05395 0.30 -0.5
1,118,119 + ABIE41_RS05395 0.30 -0.1
1,118,119 + ABIE41_RS05395 0.30 +0.2
1,118,119 + ABIE41_RS05395 0.30 +0.9
1,118,119 + ABIE41_RS05395 0.30 -0.1
1,118,119 + ABIE41_RS05395 0.30 -0.9
1,118,119 + ABIE41_RS05395 0.30 +0.1
1,118,119 + ABIE41_RS05395 0.30 +0.7
1,118,120 - ABIE41_RS05395 0.30 -0.2
1,118,120 - ABIE41_RS05395 0.30 +0.3
1,118,120 - ABIE41_RS05395 0.30 +0.7
1,118,120 - ABIE41_RS05395 0.30 -0.5
1,118,120 - ABIE41_RS05395 0.30 -1.2
1,118,120 - ABIE41_RS05395 0.30 -0.6
1,118,120 - ABIE41_RS05395 0.30 +0.1
1,118,120 - ABIE41_RS05395 0.30 -0.2
1,118,120 - ABIE41_RS05395 0.30 +1.7
1,118,480 - ABIE41_RS05395 0.58 +0.1
1,118,575 + ABIE41_RS05395 0.66 +1.2
1,118,575 + ABIE41_RS05395 0.66 +0.5
1,118,575 + ABIE41_RS05395 0.66 +1.1
1,118,575 + ABIE41_RS05395 0.66 +0.4
1,118,575 + ABIE41_RS05395 0.66 +0.1
1,118,576 - ABIE41_RS05395 0.66 -0.3
1,118,576 - ABIE41_RS05395 0.66 +0.1

Or see this region's nucleotide sequence