Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11005 and ABIE41_RS11010 are separated by 16 nucleotides ABIE41_RS11010 and ABIE41_RS11015 are separated by 265 nucleotides ABIE41_RS11015 and ABIE41_RS11020 are separated by 97 nucleotides
ABIE41_RS11005: ABIE41_RS11005 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 2,259,919 to 2,260,752
_RS11005
ABIE41_RS11010: ABIE41_RS11010 - YHS domain-containing (seleno)protein, at 2,260,769 to 2,261,332
_RS11010
ABIE41_RS11015: ABIE41_RS11015 - DUF1134 domain-containing protein, at 2,261,598 to 2,262,206
_RS11015
ABIE41_RS11020: ABIE41_RS11020 - hypothetical protein, at 2,262,304 to 2,263,557
_RS11020
Position (kb)
2261
2262
2263 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2260.953 kb on + strand, within ABIE41_RS11010 at 2260.953 kb on + strand, within ABIE41_RS11010 at 2260.954 kb on - strand, within ABIE41_RS11010 at 2260.974 kb on + strand, within ABIE41_RS11010 at 2260.974 kb on + strand, within ABIE41_RS11010 at 2260.974 kb on + strand, within ABIE41_RS11010 at 2260.975 kb on - strand, within ABIE41_RS11010 at 2260.975 kb on - strand, within ABIE41_RS11010 at 2260.975 kb on - strand, within ABIE41_RS11010 at 2261.055 kb on + strand, within ABIE41_RS11010 at 2261.109 kb on + strand, within ABIE41_RS11010 at 2261.385 kb on + strand at 2261.698 kb on + strand, within ABIE41_RS11015 at 2261.841 kb on + strand, within ABIE41_RS11015 at 2261.841 kb on + strand, within ABIE41_RS11015 at 2261.841 kb on + strand, within ABIE41_RS11015 at 2261.841 kb on + strand, within ABIE41_RS11015 at 2261.842 kb on - strand, within ABIE41_RS11015 at 2261.842 kb on - strand, within ABIE41_RS11015 at 2261.842 kb on - strand, within ABIE41_RS11015 at 2262.003 kb on + strand, within ABIE41_RS11015 at 2262.030 kb on + strand, within ABIE41_RS11015 at 2262.031 kb on - strand, within ABIE41_RS11015 at 2262.031 kb on - strand, within ABIE41_RS11015 at 2262.063 kb on + strand, within ABIE41_RS11015 at 2262.269 kb on + strand at 2262.269 kb on + strand at 2262.913 kb on + strand, within ABIE41_RS11020 at 2262.913 kb on + strand, within ABIE41_RS11020 at 2262.914 kb on - strand, within ABIE41_RS11020 at 2262.914 kb on - strand, within ABIE41_RS11020 at 2262.914 kb on - strand, within ABIE41_RS11020 at 2262.914 kb on - strand, within ABIE41_RS11020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 2,260,953 + ABIE41_RS11010 0.33 +0.2 2,260,953 + ABIE41_RS11010 0.33 -1.4 2,260,954 - ABIE41_RS11010 0.33 -0.3 2,260,974 + ABIE41_RS11010 0.36 +0.1 2,260,974 + ABIE41_RS11010 0.36 -0.7 2,260,974 + ABIE41_RS11010 0.36 +1.8 2,260,975 - ABIE41_RS11010 0.37 -1.1 2,260,975 - ABIE41_RS11010 0.37 +0.4 2,260,975 - ABIE41_RS11010 0.37 -0.2 2,261,055 + ABIE41_RS11010 0.51 +1.4 2,261,109 + ABIE41_RS11010 0.60 +0.3 2,261,385 + +0.4 2,261,698 + ABIE41_RS11015 0.16 +0.0 2,261,841 + ABIE41_RS11015 0.40 -0.7 2,261,841 + ABIE41_RS11015 0.40 -0.4 2,261,841 + ABIE41_RS11015 0.40 +1.3 2,261,841 + ABIE41_RS11015 0.40 -0.8 2,261,842 - ABIE41_RS11015 0.40 +0.3 2,261,842 - ABIE41_RS11015 0.40 +0.4 2,261,842 - ABIE41_RS11015 0.40 -1.5 2,262,003 + ABIE41_RS11015 0.67 -2.0 2,262,030 + ABIE41_RS11015 0.71 -0.9 2,262,031 - ABIE41_RS11015 0.71 -1.7 2,262,031 - ABIE41_RS11015 0.71 -2.2 2,262,063 + ABIE41_RS11015 0.76 -2.9 2,262,269 + -0.7 2,262,269 + +0.7 2,262,913 + ABIE41_RS11020 0.49 -0.1 2,262,913 + ABIE41_RS11020 0.49 +0.2 2,262,914 - ABIE41_RS11020 0.49 -1.2 2,262,914 - ABIE41_RS11020 0.49 +0.8 2,262,914 - ABIE41_RS11020 0.49 +0.4 2,262,914 - ABIE41_RS11020 0.49 +0.4
Or see this region's nucleotide sequence