Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04675

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04665 and ABIE41_RS04670 are separated by 29 nucleotidesABIE41_RS04670 and ABIE41_RS04675 are separated by 218 nucleotidesABIE41_RS04675 and ABIE41_RS04680 are separated by 55 nucleotides ABIE41_RS04665: ABIE41_RS04665 - uroporphyrinogen decarboxylase, at 970,801 to 971,841 _RS04665 ABIE41_RS04670: ABIE41_RS04670 - protoporphyrinogen oxidase HemJ, at 971,871 to 972,293 _RS04670 ABIE41_RS04675: ABIE41_RS04675 - transcription termination factor Rho, at 972,512 to 973,777 _RS04675 ABIE41_RS04680: ABIE41_RS04680 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 973,833 to 975,146 _RS04680 Position (kb) 972 973 974Strain fitness (log2 ratio) -1 0 1at 972.459 kb on + strandat 974.396 kb on + strand, within ABIE41_RS04680at 974.397 kb on - strand, within ABIE41_RS04680at 974.397 kb on - strand, within ABIE41_RS04680at 974.528 kb on + strand, within ABIE41_RS04680at 974.529 kb on - strand, within ABIE41_RS04680at 974.529 kb on - strand, within ABIE41_RS04680

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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972,459 + -0.1
974,396 + ABIE41_RS04680 0.43 +0.1
974,397 - ABIE41_RS04680 0.43 +0.7
974,397 - ABIE41_RS04680 0.43 +0.9
974,528 + ABIE41_RS04680 0.53 +0.9
974,529 - ABIE41_RS04680 0.53 +0.2
974,529 - ABIE41_RS04680 0.53 +0.6

Or see this region's nucleotide sequence