Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04275 and ABIE41_RS04280 overlap by 56 nucleotides ABIE41_RS04280 and ABIE41_RS04285 are separated by 45 nucleotides ABIE41_RS04285 and ABIE41_RS04290 are separated by 193 nucleotides ABIE41_RS04290 and ABIE41_RS04295 are separated by 35 nucleotides
ABIE41_RS04275: ABIE41_RS04275 - glycosyltransferase family 2 protein, at 889,020 to 890,921
_RS04275
ABIE41_RS04280: ABIE41_RS04280 - SCO family protein, at 890,866 to 891,459
_RS04280
ABIE41_RS04285: ABIE41_RS04285 - hypothetical protein, at 891,505 to 891,690
_RS04285
ABIE41_RS04290: ABIE41_RS04290 - PepSY domain-containing protein, at 891,884 to 892,183
_RS04290
ABIE41_RS04295: ABIE41_RS04295 - hypothetical protein, at 892,219 to 892,761
_RS04295
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 889.910 kb on - strand, within ABIE41_RS04275 at 889.910 kb on - strand, within ABIE41_RS04275 at 890.148 kb on + strand, within ABIE41_RS04275 at 890.148 kb on + strand, within ABIE41_RS04275 at 890.148 kb on + strand, within ABIE41_RS04275 at 890.149 kb on - strand, within ABIE41_RS04275 at 890.415 kb on + strand, within ABIE41_RS04275 at 890.415 kb on + strand, within ABIE41_RS04275 at 890.416 kb on - strand, within ABIE41_RS04275 at 890.416 kb on - strand, within ABIE41_RS04275 at 890.416 kb on - strand, within ABIE41_RS04275 at 890.739 kb on + strand at 890.742 kb on + strand at 890.742 kb on + strand at 890.916 kb on + strand at 890.958 kb on - strand, within ABIE41_RS04280 at 890.979 kb on + strand, within ABIE41_RS04280 at 890.980 kb on - strand, within ABIE41_RS04280 at 890.980 kb on - strand, within ABIE41_RS04280 at 890.980 kb on - strand, within ABIE41_RS04280 at 890.984 kb on + strand, within ABIE41_RS04280 at 890.984 kb on + strand, within ABIE41_RS04280 at 890.984 kb on + strand, within ABIE41_RS04280 at 890.984 kb on + strand, within ABIE41_RS04280 at 890.985 kb on - strand, within ABIE41_RS04280 at 890.985 kb on - strand, within ABIE41_RS04280 at 891.101 kb on + strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.102 kb on - strand, within ABIE41_RS04280 at 891.229 kb on - strand, within ABIE41_RS04280 at 891.335 kb on - strand, within ABIE41_RS04280 at 891.702 kb on - strand at 891.803 kb on + strand at 891.803 kb on + strand at 891.804 kb on - strand at 891.804 kb on - strand at 891.804 kb on - strand at 891.804 kb on - strand at 892.064 kb on + strand, within ABIE41_RS04290 at 892.065 kb on - strand, within ABIE41_RS04290 at 892.243 kb on + strand at 892.244 kb on - strand at 892.252 kb on + strand at 892.252 kb on + strand at 892.253 kb on - strand at 892.253 kb on - strand at 892.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 889,910 - ABIE41_RS04275 0.47 -0.5 889,910 - ABIE41_RS04275 0.47 -0.5 890,148 + ABIE41_RS04275 0.59 +0.9 890,148 + ABIE41_RS04275 0.59 +0.4 890,148 + ABIE41_RS04275 0.59 +1.4 890,149 - ABIE41_RS04275 0.59 -0.6 890,415 + ABIE41_RS04275 0.73 -0.9 890,415 + ABIE41_RS04275 0.73 -0.1 890,416 - ABIE41_RS04275 0.73 +0.8 890,416 - ABIE41_RS04275 0.73 -0.6 890,416 - ABIE41_RS04275 0.73 +1.1 890,739 + -0.2 890,742 + -0.1 890,742 + -0.6 890,916 + +0.4 890,958 - ABIE41_RS04280 0.15 -2.0 890,979 + ABIE41_RS04280 0.19 -2.4 890,980 - ABIE41_RS04280 0.19 -2.4 890,980 - ABIE41_RS04280 0.19 -1.8 890,980 - ABIE41_RS04280 0.19 -0.8 890,984 + ABIE41_RS04280 0.20 +2.0 890,984 + ABIE41_RS04280 0.20 -0.4 890,984 + ABIE41_RS04280 0.20 +2.0 890,984 + ABIE41_RS04280 0.20 -1.0 890,985 - ABIE41_RS04280 0.20 +0.4 890,985 - ABIE41_RS04280 0.20 -0.0 891,101 + ABIE41_RS04280 0.40 -2.2 891,102 - ABIE41_RS04280 0.40 -2.7 891,102 - ABIE41_RS04280 0.40 -2.8 891,102 - ABIE41_RS04280 0.40 -2.1 891,102 - ABIE41_RS04280 0.40 -2.0 891,102 - ABIE41_RS04280 0.40 -0.8 891,102 - ABIE41_RS04280 0.40 -1.4 891,229 - ABIE41_RS04280 0.61 -1.5 891,335 - ABIE41_RS04280 0.79 -0.0 891,702 - -0.1 891,803 + -0.1 891,803 + -0.4 891,804 - +0.7 891,804 - -0.6 891,804 - -0.5 891,804 - -0.0 892,064 + ABIE41_RS04290 0.60 -0.0 892,065 - ABIE41_RS04290 0.60 -0.5 892,243 + +0.5 892,244 - -0.1 892,252 + +0.9 892,252 + -1.0 892,253 - -0.4 892,253 - +1.0 892,253 - -2.4
Or see this region's nucleotide sequence