Strain Fitness in Pseudomonas sp. RS175 around PFR28_00348

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00347 and PFR28_00348 are separated by 90 nucleotidesPFR28_00348 and PFR28_00349 are separated by 205 nucleotides PFR28_00347: PFR28_00347 - Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein, at 379,138 to 380,289 _00347 PFR28_00348: PFR28_00348 - Gamma-aminobutyraldehyde dehydrogenase, at 380,380 to 381,837 _00348 PFR28_00349: PFR28_00349 - HTH-type transcriptional regulator GltC, at 382,043 to 382,957 _00349 Position (kb) 380 381 382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 379.385 kb on + strand, within PFR28_00347at 379.385 kb on + strand, within PFR28_00347at 379.385 kb on + strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.386 kb on - strand, within PFR28_00347at 379.508 kb on + strand, within PFR28_00347at 379.508 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.631 kb on + strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.632 kb on - strand, within PFR28_00347at 379.695 kb on - strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.715 kb on + strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.716 kb on - strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.730 kb on + strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.731 kb on - strand, within PFR28_00347at 379.738 kb on + strand, within PFR28_00347at 379.739 kb on - strand, within PFR28_00347at 379.739 kb on - strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.832 kb on + strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.833 kb on - strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.871 kb on + strand, within PFR28_00347at 379.872 kb on - strand, within PFR28_00347at 379.892 kb on + strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347at 379.893 kb on - strand, within PFR28_00347at 380.123 kb on + strand, within PFR28_00347at 380.124 kb on - strand, within PFR28_00347at 380.124 kb on - strand, within PFR28_00347at 380.153 kb on + strand, within PFR28_00347at 380.153 kb on + strand, within PFR28_00347at 380.153 kb on + strand, within PFR28_00347at 380.153 kb on + strand, within PFR28_00347at 380.285 kb on + strandat 380.286 kb on - strandat 380.286 kb on - strandat 380.307 kb on + strandat 380.307 kb on + strandat 380.307 kb on + strandat 380.307 kb on + strandat 380.307 kb on + strandat 380.308 kb on - strandat 380.308 kb on - strandat 380.308 kb on - strandat 380.308 kb on - strandat 380.312 kb on - strandat 380.312 kb on - strandat 380.360 kb on + strandat 380.360 kb on + strandat 380.360 kb on + strandat 380.360 kb on + strandat 380.361 kb on - strandat 380.363 kb on + strandat 380.363 kb on + strandat 380.363 kb on + strandat 380.363 kb on + strandat 380.364 kb on - strandat 380.364 kb on - strandat 380.364 kb on - strandat 380.368 kb on + strandat 380.368 kb on + strandat 380.368 kb on + strandat 380.368 kb on + strandat 380.369 kb on - strandat 380.369 kb on - strandat 380.377 kb on + strandat 380.377 kb on + strandat 380.378 kb on - strandat 380.378 kb on - strandat 380.378 kb on - strandat 380.378 kb on - strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.382 kb on - strandat 380.382 kb on - strandat 380.382 kb on - strandat 380.426 kb on + strandat 380.426 kb on + strandat 380.426 kb on + strandat 380.427 kb on - strandat 380.538 kb on - strand, within PFR28_00348at 380.738 kb on + strand, within PFR28_00348at 380.738 kb on + strand, within PFR28_00348at 380.739 kb on - strand, within PFR28_00348at 380.739 kb on - strand, within PFR28_00348at 380.957 kb on + strand, within PFR28_00348at 380.958 kb on - strand, within PFR28_00348at 380.958 kb on - strand, within PFR28_00348at 380.996 kb on + strand, within PFR28_00348at 380.996 kb on + strand, within PFR28_00348at 380.996 kb on + strand, within PFR28_00348at 380.996 kb on + strand, within PFR28_00348at 380.996 kb on + strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.997 kb on - strand, within PFR28_00348at 380.999 kb on + strand, within PFR28_00348at 381.000 kb on - strand, within PFR28_00348at 381.005 kb on + strand, within PFR28_00348at 381.005 kb on + strand, within PFR28_00348at 381.005 kb on + strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.006 kb on - strand, within PFR28_00348at 381.052 kb on + strand, within PFR28_00348at 381.053 kb on - strand, within PFR28_00348at 381.053 kb on - strand, within PFR28_00348at 381.090 kb on + strand, within PFR28_00348at 381.091 kb on - strand, within PFR28_00348at 381.091 kb on - strand, within PFR28_00348at 381.257 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.440 kb on + strand, within PFR28_00348at 381.441 kb on - strand, within PFR28_00348at 381.441 kb on - strand, within PFR28_00348at 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.909 kb on + strandat 381.910 kb on - strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.992 kb on - strandat 381.992 kb on - strandat 381.992 kb on - strandat 382.048 kb on + strandat 382.049 kb on - strandat 382.049 kb on - strandat 382.218 kb on + strand, within PFR28_00349at 382.219 kb on - strand, within PFR28_00349at 382.562 kb on - strand, within PFR28_00349at 382.563 kb on + strand, within PFR28_00349at 382.563 kb on + strand, within PFR28_00349at 382.564 kb on - strand, within PFR28_00349at 382.605 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.645 kb on - strand, within PFR28_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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379,385 + PFR28_00347 0.21 -1.3
379,385 + PFR28_00347 0.21 -3.0
379,385 + PFR28_00347 0.21 +0.4
379,386 - PFR28_00347 0.22 -0.5
379,386 - PFR28_00347 0.22 +1.1
379,386 - PFR28_00347 0.22 +0.5
379,386 - PFR28_00347 0.22 -0.3
379,386 - PFR28_00347 0.22 -0.7
379,508 + PFR28_00347 0.32 -1.5
379,508 + PFR28_00347 0.32 -0.3
379,631 + PFR28_00347 0.43 -0.0
379,631 + PFR28_00347 0.43 -1.0
379,631 + PFR28_00347 0.43 +1.1
379,631 + PFR28_00347 0.43 +0.7
379,632 - PFR28_00347 0.43 +0.1
379,632 - PFR28_00347 0.43 -0.9
379,632 - PFR28_00347 0.43 +0.3
379,695 - PFR28_00347 0.48 -0.9
379,715 + PFR28_00347 0.50 -1.8
379,715 + PFR28_00347 0.50 +0.7
379,715 + PFR28_00347 0.50 +0.3
379,715 + PFR28_00347 0.50 +1.4
379,715 + PFR28_00347 0.50 -1.3
379,715 + PFR28_00347 0.50 +0.5
379,715 + PFR28_00347 0.50 -2.0
379,716 - PFR28_00347 0.50 +0.6
379,716 - PFR28_00347 0.50 -0.5
379,716 - PFR28_00347 0.50 -0.1
379,716 - PFR28_00347 0.50 +0.2
379,716 - PFR28_00347 0.50 +0.7
379,716 - PFR28_00347 0.50 -0.8
379,716 - PFR28_00347 0.50 -0.0
379,730 + PFR28_00347 0.51 +1.0
379,730 + PFR28_00347 0.51 -0.5
379,730 + PFR28_00347 0.51 -0.9
379,730 + PFR28_00347 0.51 +0.6
379,730 + PFR28_00347 0.51 -0.7
379,731 - PFR28_00347 0.51 +1.5
379,731 - PFR28_00347 0.51 -0.3
379,731 - PFR28_00347 0.51 -1.0
379,731 - PFR28_00347 0.51 -1.9
379,731 - PFR28_00347 0.51 -1.8
379,731 - PFR28_00347 0.51 +0.3
379,731 - PFR28_00347 0.51 -0.6
379,738 + PFR28_00347 0.52 -0.0
379,739 - PFR28_00347 0.52 +0.5
379,739 - PFR28_00347 0.52 +0.8
379,832 + PFR28_00347 0.60 -0.9
379,832 + PFR28_00347 0.60 -1.3
379,832 + PFR28_00347 0.60 -1.5
379,832 + PFR28_00347 0.60 +0.8
379,833 - PFR28_00347 0.60 -0.6
379,833 - PFR28_00347 0.60 -1.2
379,833 - PFR28_00347 0.60 +1.2
379,833 - PFR28_00347 0.60 -0.7
379,871 + PFR28_00347 0.64 +2.9
379,871 + PFR28_00347 0.64 +0.2
379,871 + PFR28_00347 0.64 -0.2
379,872 - PFR28_00347 0.64 -1.2
379,892 + PFR28_00347 0.65 +0.1
379,893 - PFR28_00347 0.66 +0.1
379,893 - PFR28_00347 0.66 -0.2
379,893 - PFR28_00347 0.66 +0.0
380,123 + PFR28_00347 0.86 +3.3
380,124 - PFR28_00347 0.86 +0.8
380,124 - PFR28_00347 0.86 +1.3
380,153 + PFR28_00347 0.88 -0.3
380,153 + PFR28_00347 0.88 +0.6
380,153 + PFR28_00347 0.88 +0.7
380,153 + PFR28_00347 0.88 +0.1
380,285 + -0.9
380,286 - -1.0
380,286 - +0.2
380,307 + -2.0
380,307 + -0.9
380,307 + +2.9
380,307 + +0.6
380,307 + -2.0
380,308 - -0.4
380,308 - -0.8
380,308 - +0.1
380,308 - +0.7
380,312 - +0.3
380,312 - -0.2
380,360 + +1.4
380,360 + -1.8
380,360 + +1.7
380,360 + -1.4
380,361 - -0.4
380,363 + +0.9
380,363 + +1.8
380,363 + -0.6
380,363 + +1.7
380,364 - -1.6
380,364 - +1.4
380,364 - -0.6
380,368 + -0.3
380,368 + -0.6
380,368 + -1.1
380,368 + +0.5
380,369 - -0.1
380,369 - -0.6
380,377 + -0.4
380,377 + +0.1
380,378 - +2.5
380,378 - -0.8
380,378 - -0.3
380,378 - -1.1
380,381 + +0.1
380,381 + -1.3
380,381 + +1.2
380,381 + -0.9
380,381 + +1.1
380,381 + +3.0
380,381 + -2.2
380,381 + -0.2
380,382 - +0.8
380,382 - -0.0
380,382 - +1.3
380,426 + -0.2
380,426 + -0.5
380,426 + +1.0
380,427 - -1.2
380,538 - PFR28_00348 0.11 -1.1
380,738 + PFR28_00348 0.25 -1.3
380,738 + PFR28_00348 0.25 +1.9
380,739 - PFR28_00348 0.25 -0.1
380,739 - PFR28_00348 0.25 +1.0
380,957 + PFR28_00348 0.40 +0.7
380,958 - PFR28_00348 0.40 -1.6
380,958 - PFR28_00348 0.40 -1.5
380,996 + PFR28_00348 0.42 +0.8
380,996 + PFR28_00348 0.42 +0.8
380,996 + PFR28_00348 0.42 +0.9
380,996 + PFR28_00348 0.42 +1.7
380,996 + PFR28_00348 0.42 +0.0
380,997 - PFR28_00348 0.42 +0.9
380,997 - PFR28_00348 0.42 -0.5
380,997 - PFR28_00348 0.42 -1.8
380,997 - PFR28_00348 0.42 -1.2
380,997 - PFR28_00348 0.42 +0.8
380,997 - PFR28_00348 0.42 +1.3
380,999 + PFR28_00348 0.42 -0.2
381,000 - PFR28_00348 0.43 +0.3
381,005 + PFR28_00348 0.43 -0.4
381,005 + PFR28_00348 0.43 -2.8
381,005 + PFR28_00348 0.43 +1.1
381,006 - PFR28_00348 0.43 +1.5
381,006 - PFR28_00348 0.43 -0.7
381,006 - PFR28_00348 0.43 +1.5
381,006 - PFR28_00348 0.43 -0.4
381,006 - PFR28_00348 0.43 +0.6
381,006 - PFR28_00348 0.43 +0.5
381,006 - PFR28_00348 0.43 +0.8
381,006 - PFR28_00348 0.43 -0.8
381,006 - PFR28_00348 0.43 -0.6
381,006 - PFR28_00348 0.43 +2.9
381,052 + PFR28_00348 0.46 -0.8
381,053 - PFR28_00348 0.46 -1.1
381,053 - PFR28_00348 0.46 -0.4
381,090 + PFR28_00348 0.49 +0.3
381,091 - PFR28_00348 0.49 +0.4
381,091 - PFR28_00348 0.49 -2.6
381,257 - PFR28_00348 0.60 -0.8
381,429 - PFR28_00348 0.72 +0.2
381,429 - PFR28_00348 0.72 +1.6
381,429 - PFR28_00348 0.72 -0.2
381,429 - PFR28_00348 0.72 +1.2
381,440 + PFR28_00348 0.73 +1.8
381,441 - PFR28_00348 0.73 +1.0
381,441 - PFR28_00348 0.73 +0.7
381,905 + -0.9
381,905 + -1.2
381,905 + -0.5
381,905 + -0.4
381,905 + +0.5
381,905 + +0.2
381,909 + +1.0
381,910 - +1.4
381,991 + +0.7
381,991 + +1.2
381,991 + +1.3
381,991 + +0.6
381,992 - +0.6
381,992 - +0.3
381,992 - +0.9
382,048 + -1.8
382,049 - +1.2
382,049 - -1.4
382,218 + PFR28_00349 0.19 +1.4
382,219 - PFR28_00349 0.19 -0.5
382,562 - PFR28_00349 0.57 -0.1
382,563 + PFR28_00349 0.57 -0.5
382,563 + PFR28_00349 0.57 -3.3
382,564 - PFR28_00349 0.57 -0.5
382,605 + PFR28_00349 0.61 +0.1
382,641 + PFR28_00349 0.65 -3.8
382,641 + PFR28_00349 0.65 +0.7
382,641 + PFR28_00349 0.65 +0.5
382,642 - PFR28_00349 0.65 +0.2
382,642 - PFR28_00349 0.65 +1.9
382,642 - PFR28_00349 0.65 +1.5
382,642 - PFR28_00349 0.65 +0.8
382,642 - PFR28_00349 0.65 +0.5
382,642 - PFR28_00349 0.65 +0.8
382,645 - PFR28_00349 0.66 +0.2

Or see this region's nucleotide sequence