Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17380

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17375 and ABIE41_RS17380 are separated by 113 nucleotidesABIE41_RS17380 and ABIE41_RS17385 are separated by 12 nucleotidesABIE41_RS17385 and ABIE41_RS17390 overlap by 1 nucleotidesABIE41_RS17390 and ABIE41_RS17395 are separated by 61 nucleotides ABIE41_RS17375: ABIE41_RS17375 - GntR family transcriptional regulator, at 3,583,175 to 3,583,912 _RS17375 ABIE41_RS17380: ABIE41_RS17380 - amidohydrolase family protein, at 3,584,026 to 3,585,297 _RS17380 ABIE41_RS17385: ABIE41_RS17385 - hypothetical protein, at 3,585,310 to 3,585,726 _RS17385 ABIE41_RS17390: ABIE41_RS17390 - hypothetical protein, at 3,585,726 to 3,585,926 _RS17390 ABIE41_RS17395: ABIE41_RS17395 - ABC transporter ATP-binding protein, at 3,585,988 to 3,587,737 _RS17395 Position (kb) 3584 3585 3586Strain fitness (log2 ratio) -2 -1 0 1at 3583.148 kb on + strandat 3583.149 kb on - strandat 3583.149 kb on - strandat 3583.149 kb on - strandat 3583.149 kb on - strandat 3583.149 kb on - strandat 3583.637 kb on + strand, within ABIE41_RS17375at 3583.637 kb on + strand, within ABIE41_RS17375at 3583.637 kb on + strand, within ABIE41_RS17375at 3583.637 kb on + strand, within ABIE41_RS17375at 3583.638 kb on - strand, within ABIE41_RS17375at 3583.638 kb on - strand, within ABIE41_RS17375at 3583.869 kb on - strandat 3583.869 kb on - strandat 3583.972 kb on - strandat 3583.972 kb on - strandat 3583.972 kb on - strandat 3584.323 kb on + strand, within ABIE41_RS17380at 3584.323 kb on + strand, within ABIE41_RS17380at 3584.323 kb on + strand, within ABIE41_RS17380at 3584.324 kb on - strand, within ABIE41_RS17380at 3584.452 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.578 kb on + strand, within ABIE41_RS17380at 3584.723 kb on - strand, within ABIE41_RS17380at 3584.723 kb on - strand, within ABIE41_RS17380at 3584.728 kb on + strand, within ABIE41_RS17380at 3584.728 kb on + strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380at 3584.858 kb on - strand, within ABIE41_RS17380

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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3,583,148 + -0.2
3,583,149 - +0.2
3,583,149 - -0.4
3,583,149 - -0.6
3,583,149 - +0.0
3,583,149 - +1.1
3,583,637 + ABIE41_RS17375 0.63 -0.7
3,583,637 + ABIE41_RS17375 0.63 -1.1
3,583,637 + ABIE41_RS17375 0.63 -0.3
3,583,637 + ABIE41_RS17375 0.63 +1.5
3,583,638 - ABIE41_RS17375 0.63 -1.6
3,583,638 - ABIE41_RS17375 0.63 +0.5
3,583,869 - +1.4
3,583,869 - -1.5
3,583,972 - -2.1
3,583,972 - +0.7
3,583,972 - +0.7
3,584,323 + ABIE41_RS17380 0.23 -0.1
3,584,323 + ABIE41_RS17380 0.23 -0.4
3,584,323 + ABIE41_RS17380 0.23 +1.1
3,584,324 - ABIE41_RS17380 0.23 +0.2
3,584,452 + ABIE41_RS17380 0.33 +0.6
3,584,578 + ABIE41_RS17380 0.43 -0.3
3,584,578 + ABIE41_RS17380 0.43 -0.4
3,584,578 + ABIE41_RS17380 0.43 -0.1
3,584,578 + ABIE41_RS17380 0.43 +0.2
3,584,578 + ABIE41_RS17380 0.43 -0.2
3,584,578 + ABIE41_RS17380 0.43 +0.1
3,584,723 - ABIE41_RS17380 0.55 +1.0
3,584,723 - ABIE41_RS17380 0.55 -1.0
3,584,728 + ABIE41_RS17380 0.55 -2.2
3,584,728 + ABIE41_RS17380 0.55 -0.2
3,584,858 - ABIE41_RS17380 0.65 +0.4
3,584,858 - ABIE41_RS17380 0.65 +0.7
3,584,858 - ABIE41_RS17380 0.65 -0.3
3,584,858 - ABIE41_RS17380 0.65 +0.5
3,584,858 - ABIE41_RS17380 0.65 -0.6

Or see this region's nucleotide sequence