Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17375 and ABIE41_RS17380 are separated by 113 nucleotides ABIE41_RS17380 and ABIE41_RS17385 are separated by 12 nucleotides ABIE41_RS17385 and ABIE41_RS17390 overlap by 1 nucleotides ABIE41_RS17390 and ABIE41_RS17395 are separated by 61 nucleotides
ABIE41_RS17375: ABIE41_RS17375 - GntR family transcriptional regulator, at 3,583,175 to 3,583,912
_RS17375
ABIE41_RS17380: ABIE41_RS17380 - amidohydrolase family protein, at 3,584,026 to 3,585,297
_RS17380
ABIE41_RS17385: ABIE41_RS17385 - hypothetical protein, at 3,585,310 to 3,585,726
_RS17385
ABIE41_RS17390: ABIE41_RS17390 - hypothetical protein, at 3,585,726 to 3,585,926
_RS17390
ABIE41_RS17395: ABIE41_RS17395 - ABC transporter ATP-binding protein, at 3,585,988 to 3,587,737
_RS17395
Position (kb)
3584
3585
3586 Strain fitness (log2 ratio)
-2
-1
0
1 at 3583.148 kb on + strand at 3583.149 kb on - strand at 3583.149 kb on - strand at 3583.149 kb on - strand at 3583.149 kb on - strand at 3583.149 kb on - strand at 3583.637 kb on + strand, within ABIE41_RS17375 at 3583.637 kb on + strand, within ABIE41_RS17375 at 3583.637 kb on + strand, within ABIE41_RS17375 at 3583.637 kb on + strand, within ABIE41_RS17375 at 3583.638 kb on - strand, within ABIE41_RS17375 at 3583.638 kb on - strand, within ABIE41_RS17375 at 3583.869 kb on - strand at 3583.869 kb on - strand at 3583.972 kb on - strand at 3583.972 kb on - strand at 3583.972 kb on - strand at 3584.323 kb on + strand, within ABIE41_RS17380 at 3584.323 kb on + strand, within ABIE41_RS17380 at 3584.323 kb on + strand, within ABIE41_RS17380 at 3584.324 kb on - strand, within ABIE41_RS17380 at 3584.452 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.578 kb on + strand, within ABIE41_RS17380 at 3584.723 kb on - strand, within ABIE41_RS17380 at 3584.723 kb on - strand, within ABIE41_RS17380 at 3584.728 kb on + strand, within ABIE41_RS17380 at 3584.728 kb on + strand, within ABIE41_RS17380 at 3584.858 kb on - strand, within ABIE41_RS17380 at 3584.858 kb on - strand, within ABIE41_RS17380 at 3584.858 kb on - strand, within ABIE41_RS17380 at 3584.858 kb on - strand, within ABIE41_RS17380 at 3584.858 kb on - strand, within ABIE41_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 3,583,148 + -0.2 3,583,149 - +0.2 3,583,149 - -0.4 3,583,149 - -0.6 3,583,149 - +0.0 3,583,149 - +1.1 3,583,637 + ABIE41_RS17375 0.63 -0.7 3,583,637 + ABIE41_RS17375 0.63 -1.1 3,583,637 + ABIE41_RS17375 0.63 -0.3 3,583,637 + ABIE41_RS17375 0.63 +1.5 3,583,638 - ABIE41_RS17375 0.63 -1.6 3,583,638 - ABIE41_RS17375 0.63 +0.5 3,583,869 - +1.4 3,583,869 - -1.5 3,583,972 - -2.1 3,583,972 - +0.7 3,583,972 - +0.7 3,584,323 + ABIE41_RS17380 0.23 -0.1 3,584,323 + ABIE41_RS17380 0.23 -0.4 3,584,323 + ABIE41_RS17380 0.23 +1.1 3,584,324 - ABIE41_RS17380 0.23 +0.2 3,584,452 + ABIE41_RS17380 0.33 +0.6 3,584,578 + ABIE41_RS17380 0.43 -0.3 3,584,578 + ABIE41_RS17380 0.43 -0.4 3,584,578 + ABIE41_RS17380 0.43 -0.1 3,584,578 + ABIE41_RS17380 0.43 +0.2 3,584,578 + ABIE41_RS17380 0.43 -0.2 3,584,578 + ABIE41_RS17380 0.43 +0.1 3,584,723 - ABIE41_RS17380 0.55 +1.0 3,584,723 - ABIE41_RS17380 0.55 -1.0 3,584,728 + ABIE41_RS17380 0.55 -2.2 3,584,728 + ABIE41_RS17380 0.55 -0.2 3,584,858 - ABIE41_RS17380 0.65 +0.4 3,584,858 - ABIE41_RS17380 0.65 +0.7 3,584,858 - ABIE41_RS17380 0.65 -0.3 3,584,858 - ABIE41_RS17380 0.65 +0.5 3,584,858 - ABIE41_RS17380 0.65 -0.6
Or see this region's nucleotide sequence