Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14115 and ABIE41_RS14120 are separated by 4 nucleotides ABIE41_RS14120 and ABIE41_RS14125 are separated by 43 nucleotides ABIE41_RS14125 and ABIE41_RS14130 are separated by 19 nucleotides ABIE41_RS14130 and ABIE41_RS14135 overlap by 1 nucleotides ABIE41_RS14135 and ABIE41_RS14140 are separated by 194 nucleotides
ABIE41_RS14115: ABIE41_RS14115 - nitroreductase, at 2,894,002 to 2,894,571
_RS14115
ABIE41_RS14120: ABIE41_RS14120 - flavin reductase family protein, at 2,894,576 to 2,895,181
_RS14120
ABIE41_RS14125: ABIE41_RS14125 - heavy-metal-associated domain-containing protein, at 2,895,225 to 2,895,431
_RS14125
ABIE41_RS14130: ABIE41_RS14130 - CoA ester lyase, at 2,895,451 to 2,896,329
_RS14130
ABIE41_RS14135: ABIE41_RS14135 - MaoC family dehydratase, at 2,896,329 to 2,896,826
_RS14135
ABIE41_RS14140: ABIE41_RS14140 - lytic transglycosylase domain-containing protein, at 2,897,021 to 2,898,100
_RS14140
Position (kb)
2895
2896
2897 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2894.560 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.582 kb on + strand at 2894.583 kb on - strand at 2894.702 kb on + strand, within ABIE41_RS14120 at 2894.708 kb on + strand, within ABIE41_RS14120 at 2894.709 kb on - strand, within ABIE41_RS14120 at 2895.132 kb on - strand at 2896.414 kb on + strand, within ABIE41_RS14135 at 2896.789 kb on + strand at 2896.790 kb on - strand at 2896.790 kb on - strand at 2896.790 kb on - strand at 2896.790 kb on - strand at 2896.790 kb on - strand at 2896.790 kb on - strand at 2896.862 kb on + strand at 2896.862 kb on + strand at 2896.863 kb on - strand at 2896.863 kb on - strand at 2896.942 kb on - strand at 2897.020 kb on + strand at 2897.020 kb on + strand at 2897.021 kb on - strand at 2897.021 kb on - strand at 2897.021 kb on - strand at 2897.021 kb on - strand at 2897.021 kb on - strand at 2897.021 kb on - strand at 2897.271 kb on - strand, within ABIE41_RS14140
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 2,894,560 + +0.8 2,894,582 + +0.8 2,894,582 + -1.5 2,894,582 + +0.8 2,894,582 + -1.4 2,894,582 + -0.4 2,894,583 - +0.4 2,894,702 + ABIE41_RS14120 0.21 -0.0 2,894,708 + ABIE41_RS14120 0.22 +0.2 2,894,709 - ABIE41_RS14120 0.22 -0.0 2,895,132 - +0.2 2,896,414 + ABIE41_RS14135 0.17 -3.3 2,896,789 + -3.4 2,896,790 - -0.0 2,896,790 - -0.1 2,896,790 - -2.4 2,896,790 - -0.5 2,896,790 - -0.5 2,896,790 - +0.3 2,896,862 + -0.2 2,896,862 + -0.8 2,896,863 - +0.5 2,896,863 - -0.1 2,896,942 - +0.2 2,897,020 + +0.7 2,897,020 + -1.7 2,897,021 - +0.4 2,897,021 - -1.6 2,897,021 - +0.2 2,897,021 - -0.9 2,897,021 - +0.9 2,897,021 - -0.9 2,897,271 - ABIE41_RS14140 0.23 -2.6
Or see this region's nucleotide sequence