Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05495

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05485 and ABIE41_RS05490 are separated by 20 nucleotidesABIE41_RS05490 and ABIE41_RS05495 are separated by 131 nucleotidesABIE41_RS05495 and ABIE41_RS05500 are separated by 5 nucleotides ABIE41_RS05485: ABIE41_RS05485 - flagellar biosynthesis repressor FlbT, at 1,132,808 to 1,133,272 _RS05485 ABIE41_RS05490: ABIE41_RS05490 - flagellar biosynthesis regulator FlaF, at 1,133,293 to 1,133,640 _RS05490 ABIE41_RS05495: ABIE41_RS05495 - flagellar hook-associated family protein, at 1,133,772 to 1,134,824 _RS05495 ABIE41_RS05500: ABIE41_RS05500 - flagellar hook-associated protein FlgK, at 1,134,830 to 1,136,311 _RS05500 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1132.803 kb on + strandat 1132.803 kb on + strandat 1132.873 kb on + strand, within ABIE41_RS05485at 1132.873 kb on + strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.600 kb on + strand, within ABIE41_RS05490at 1133.600 kb on + strand, within ABIE41_RS05490at 1133.601 kb on - strand, within ABIE41_RS05490at 1133.601 kb on - strand, within ABIE41_RS05490at 1133.601 kb on - strand, within ABIE41_RS05490at 1133.601 kb on - strand, within ABIE41_RS05490at 1133.601 kb on - strand, within ABIE41_RS05490at 1133.616 kb on + strandat 1133.624 kb on + strandat 1133.624 kb on + strandat 1133.624 kb on + strandat 1133.636 kb on + strandat 1133.636 kb on + strandat 1133.636 kb on + strandat 1133.637 kb on - strandat 1133.637 kb on - strandat 1133.637 kb on - strandat 1133.637 kb on - strandat 1133.825 kb on - strandat 1133.825 kb on - strandat 1133.876 kb on - strandat 1134.088 kb on + strand, within ABIE41_RS05495at 1134.089 kb on - strand, within ABIE41_RS05495at 1134.100 kb on + strand, within ABIE41_RS05495at 1134.101 kb on - strand, within ABIE41_RS05495at 1134.101 kb on - strand, within ABIE41_RS05495at 1134.101 kb on - strand, within ABIE41_RS05495at 1134.101 kb on - strand, within ABIE41_RS05495at 1134.326 kb on - strand, within ABIE41_RS05495at 1134.382 kb on + strand, within ABIE41_RS05495at 1134.414 kb on - strand, within ABIE41_RS05495at 1134.649 kb on + strand, within ABIE41_RS05495at 1134.649 kb on + strand, within ABIE41_RS05495at 1134.650 kb on - strand, within ABIE41_RS05495at 1134.650 kb on - strand, within ABIE41_RS05495at 1134.650 kb on - strand, within ABIE41_RS05495at 1134.706 kb on + strand, within ABIE41_RS05495at 1134.712 kb on + strand, within ABIE41_RS05495at 1134.799 kb on + strandat 1134.799 kb on + strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.800 kb on - strandat 1134.831 kb on + strandat 1134.831 kb on + strandat 1134.831 kb on + strandat 1134.832 kb on - strandat 1134.832 kb on - strandat 1134.832 kb on - strandat 1135.110 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.185 kb on + strand, within ABIE41_RS05500at 1135.186 kb on - strand, within ABIE41_RS05500at 1135.186 kb on - strand, within ABIE41_RS05500at 1135.186 kb on - strand, within ABIE41_RS05500at 1135.186 kb on - strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.191 kb on + strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.192 kb on - strand, within ABIE41_RS05500at 1135.350 kb on + strand, within ABIE41_RS05500at 1135.350 kb on + strand, within ABIE41_RS05500at 1135.350 kb on + strand, within ABIE41_RS05500at 1135.449 kb on + strand, within ABIE41_RS05500at 1135.449 kb on + strand, within ABIE41_RS05500at 1135.450 kb on - strand, within ABIE41_RS05500at 1135.551 kb on + strand, within ABIE41_RS05500at 1135.551 kb on + strand, within ABIE41_RS05500at 1135.551 kb on + strand, within ABIE41_RS05500at 1135.551 kb on + strand, within ABIE41_RS05500at 1135.552 kb on - strand, within ABIE41_RS05500at 1135.552 kb on - strand, within ABIE41_RS05500at 1135.650 kb on + strand, within ABIE41_RS05500at 1135.650 kb on + strand, within ABIE41_RS05500at 1135.650 kb on + strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500at 1135.651 kb on - strand, within ABIE41_RS05500

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,132,803 + +0.3
1,132,803 + +0.4
1,132,873 + ABIE41_RS05485 0.14 +0.2
1,132,873 + ABIE41_RS05485 0.14 -0.9
1,132,874 - ABIE41_RS05485 0.14 +0.4
1,132,874 - ABIE41_RS05485 0.14 +0.9
1,132,923 + ABIE41_RS05485 0.25 +0.1
1,132,923 + ABIE41_RS05485 0.25 +0.6
1,133,112 + ABIE41_RS05485 0.65 +2.2
1,133,112 + ABIE41_RS05485 0.65 -3.3
1,133,112 + ABIE41_RS05485 0.65 +0.2
1,133,112 + ABIE41_RS05485 0.65 -0.8
1,133,112 + ABIE41_RS05485 0.65 -0.2
1,133,113 - ABIE41_RS05485 0.66 +0.8
1,133,113 - ABIE41_RS05485 0.66 +2.3
1,133,113 - ABIE41_RS05485 0.66 -2.1
1,133,113 - ABIE41_RS05485 0.66 +2.5
1,133,238 + +0.5
1,133,238 + +0.4
1,133,238 + -0.8
1,133,238 + +0.5
1,133,238 + -1.9
1,133,238 + -0.9
1,133,239 - +0.3
1,133,239 - +0.4
1,133,239 - +0.9
1,133,239 - +0.4
1,133,239 - -0.9
1,133,239 - -0.0
1,133,239 - +1.1
1,133,239 - +0.1
1,133,239 - +0.6
1,133,239 - +0.2
1,133,239 - +1.1
1,133,239 - +0.3
1,133,600 + ABIE41_RS05490 0.88 -0.9
1,133,600 + ABIE41_RS05490 0.88 +0.3
1,133,601 - ABIE41_RS05490 0.89 -0.5
1,133,601 - ABIE41_RS05490 0.89 -0.7
1,133,601 - ABIE41_RS05490 0.89 +0.6
1,133,601 - ABIE41_RS05490 0.89 +0.2
1,133,601 - ABIE41_RS05490 0.89 -0.3
1,133,616 + +0.5
1,133,624 + +0.5
1,133,624 + +0.7
1,133,624 + +0.0
1,133,636 + -0.2
1,133,636 + +0.0
1,133,636 + -0.2
1,133,637 - +0.3
1,133,637 - +0.4
1,133,637 - +0.2
1,133,637 - +0.4
1,133,825 - -0.0
1,133,825 - +0.3
1,133,876 - -0.0
1,134,088 + ABIE41_RS05495 0.30 +0.8
1,134,089 - ABIE41_RS05495 0.30 -0.9
1,134,100 + ABIE41_RS05495 0.31 +0.3
1,134,101 - ABIE41_RS05495 0.31 -0.2
1,134,101 - ABIE41_RS05495 0.31 -0.6
1,134,101 - ABIE41_RS05495 0.31 -1.9
1,134,101 - ABIE41_RS05495 0.31 -0.2
1,134,326 - ABIE41_RS05495 0.53 -0.2
1,134,382 + ABIE41_RS05495 0.58 +1.0
1,134,414 - ABIE41_RS05495 0.61 -0.8
1,134,649 + ABIE41_RS05495 0.83 +0.2
1,134,649 + ABIE41_RS05495 0.83 -0.7
1,134,650 - ABIE41_RS05495 0.83 -0.8
1,134,650 - ABIE41_RS05495 0.83 -0.1
1,134,650 - ABIE41_RS05495 0.83 +0.4
1,134,706 + ABIE41_RS05495 0.89 -1.1
1,134,712 + ABIE41_RS05495 0.89 -0.1
1,134,799 + +0.1
1,134,799 + -1.5
1,134,800 - +1.3
1,134,800 - -0.3
1,134,800 - +0.4
1,134,800 - +0.1
1,134,800 - +0.5
1,134,800 - -0.5
1,134,800 - -0.4
1,134,800 - +0.2
1,134,800 - +0.1
1,134,831 + -0.1
1,134,831 + -0.3
1,134,831 + -0.5
1,134,832 - +0.6
1,134,832 - +0.4
1,134,832 - +1.1
1,135,110 + ABIE41_RS05500 0.19 -0.8
1,135,185 + ABIE41_RS05500 0.24 +0.1
1,135,185 + ABIE41_RS05500 0.24 +0.9
1,135,185 + ABIE41_RS05500 0.24 +0.1
1,135,185 + ABIE41_RS05500 0.24 +0.3
1,135,185 + ABIE41_RS05500 0.24 -0.1
1,135,185 + ABIE41_RS05500 0.24 +1.8
1,135,185 + ABIE41_RS05500 0.24 -1.5
1,135,186 - ABIE41_RS05500 0.24 -0.4
1,135,186 - ABIE41_RS05500 0.24 -0.6
1,135,186 - ABIE41_RS05500 0.24 +1.1
1,135,186 - ABIE41_RS05500 0.24 -0.2
1,135,191 + ABIE41_RS05500 0.24 -0.1
1,135,191 + ABIE41_RS05500 0.24 -0.0
1,135,191 + ABIE41_RS05500 0.24 +0.5
1,135,191 + ABIE41_RS05500 0.24 +1.5
1,135,191 + ABIE41_RS05500 0.24 +0.8
1,135,191 + ABIE41_RS05500 0.24 +1.7
1,135,191 + ABIE41_RS05500 0.24 +1.2
1,135,191 + ABIE41_RS05500 0.24 +0.5
1,135,191 + ABIE41_RS05500 0.24 +0.1
1,135,191 + ABIE41_RS05500 0.24 +2.0
1,135,192 - ABIE41_RS05500 0.24 +1.0
1,135,192 - ABIE41_RS05500 0.24 +0.2
1,135,192 - ABIE41_RS05500 0.24 +0.5
1,135,192 - ABIE41_RS05500 0.24 -0.2
1,135,192 - ABIE41_RS05500 0.24 -2.5
1,135,192 - ABIE41_RS05500 0.24 +0.8
1,135,192 - ABIE41_RS05500 0.24 -0.8
1,135,350 + ABIE41_RS05500 0.35 +0.7
1,135,350 + ABIE41_RS05500 0.35 +0.3
1,135,350 + ABIE41_RS05500 0.35 -0.1
1,135,449 + ABIE41_RS05500 0.42 +0.3
1,135,449 + ABIE41_RS05500 0.42 +0.7
1,135,450 - ABIE41_RS05500 0.42 -0.8
1,135,551 + ABIE41_RS05500 0.49 -0.5
1,135,551 + ABIE41_RS05500 0.49 +0.6
1,135,551 + ABIE41_RS05500 0.49 -0.4
1,135,551 + ABIE41_RS05500 0.49 +0.9
1,135,552 - ABIE41_RS05500 0.49 -0.1
1,135,552 - ABIE41_RS05500 0.49 -1.0
1,135,650 + ABIE41_RS05500 0.55 -0.2
1,135,650 + ABIE41_RS05500 0.55 -1.0
1,135,650 + ABIE41_RS05500 0.55 +3.4
1,135,651 - ABIE41_RS05500 0.55 +0.1
1,135,651 - ABIE41_RS05500 0.55 -0.1
1,135,651 - ABIE41_RS05500 0.55 +1.0
1,135,651 - ABIE41_RS05500 0.55 +2.8
1,135,651 - ABIE41_RS05500 0.55 +0.5
1,135,651 - ABIE41_RS05500 0.55 -0.4
1,135,651 - ABIE41_RS05500 0.55 -0.5

Or see this region's nucleotide sequence