Experiment: Guanosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00886 and PFR28_00887 are separated by 87 nucleotides PFR28_00887 and PFR28_00888 are separated by 183 nucleotides PFR28_00888 and PFR28_00889 are separated by 72 nucleotides
PFR28_00886: PFR28_00886 - 3-ketoacyl-CoA thiolase, at 958,885 to 960,069
_00886
PFR28_00887: PFR28_00887 - hypothetical protein, at 960,157 to 960,354
_00887
PFR28_00888: PFR28_00888 - putative inner membrane transporter YhbE, at 960,538 to 961,500
_00888
PFR28_00889: PFR28_00889 - Fumarate hydratase class II, at 961,573 to 962,967
_00889
Position (kb) 960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.560 kb on + strand, within PFR28_00886 at 959.561 kb on - strand, within PFR28_00886 at 959.561 kb on - strand, within PFR28_00886 at 959.561 kb on - strand, within PFR28_00886 at 959.561 kb on - strand, within PFR28_00886 at 959.561 kb on - strand, within PFR28_00886 at 959.823 kb on - strand, within PFR28_00886 at 959.823 kb on - strand, within PFR28_00886 at 959.823 kb on - strand, within PFR28_00886 at 959.860 kb on + strand, within PFR28_00886 at 959.861 kb on - strand, within PFR28_00886 at 959.861 kb on - strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.896 kb on + strand, within PFR28_00886 at 959.897 kb on - strand, within PFR28_00886 at 960.002 kb on - strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.023 kb on + strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.024 kb on - strand at 960.130 kb on + strand at 960.131 kb on - strand at 960.138 kb on + strand at 960.138 kb on + strand at 960.139 kb on - strand at 960.139 kb on - strand at 960.195 kb on + strand, within PFR28_00887 at 960.196 kb on - strand, within PFR28_00887 at 960.197 kb on + strand, within PFR28_00887 at 960.197 kb on + strand, within PFR28_00887 at 960.197 kb on + strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.198 kb on - strand, within PFR28_00887 at 960.272 kb on + strand, within PFR28_00887 at 960.273 kb on - strand, within PFR28_00887 at 960.390 kb on + strand at 960.391 kb on - strand at 960.391 kb on - strand at 960.391 kb on - strand at 960.444 kb on - strand at 960.501 kb on + strand at 960.501 kb on + strand at 960.501 kb on + strand at 960.501 kb on + strand at 960.502 kb on - strand at 960.502 kb on - strand at 960.502 kb on - strand at 960.502 kb on - strand at 960.502 kb on - strand at 960.502 kb on - strand at 960.506 kb on + strand at 960.506 kb on + strand at 960.506 kb on + strand at 960.506 kb on + strand at 960.507 kb on - strand at 960.507 kb on - strand at 960.507 kb on - strand at 960.507 kb on - strand at 960.565 kb on + strand at 960.565 kb on + strand at 960.565 kb on + strand at 960.566 kb on - strand at 960.566 kb on - strand at 960.566 kb on - strand at 960.566 kb on - strand at 960.566 kb on - strand at 960.566 kb on - strand at 960.703 kb on + strand, within PFR28_00888 at 960.703 kb on + strand, within PFR28_00888 at 960.703 kb on + strand, within PFR28_00888 at 960.703 kb on + strand, within PFR28_00888 at 960.704 kb on - strand, within PFR28_00888 at 960.704 kb on - strand, within PFR28_00888 at 960.704 kb on - strand, within PFR28_00888 at 960.704 kb on - strand, within PFR28_00888 at 960.799 kb on + strand, within PFR28_00888 at 960.799 kb on + strand, within PFR28_00888 at 960.799 kb on + strand, within PFR28_00888 at 960.799 kb on + strand, within PFR28_00888 at 960.799 kb on + strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.800 kb on - strand, within PFR28_00888 at 960.808 kb on + strand, within PFR28_00888 at 960.808 kb on + strand, within PFR28_00888 at 960.809 kb on - strand, within PFR28_00888 at 960.809 kb on - strand, within PFR28_00888 at 960.809 kb on - strand, within PFR28_00888 at 961.012 kb on + strand, within PFR28_00888 at 961.012 kb on + strand, within PFR28_00888 at 961.012 kb on + strand, within PFR28_00888 at 961.012 kb on + strand, within PFR28_00888 at 961.013 kb on - strand, within PFR28_00888 at 961.013 kb on - strand, within PFR28_00888 at 961.064 kb on - strand, within PFR28_00888 at 961.064 kb on - strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.126 kb on + strand, within PFR28_00888 at 961.127 kb on - strand, within PFR28_00888 at 961.127 kb on - strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.160 kb on + strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.161 kb on - strand, within PFR28_00888 at 961.227 kb on + strand, within PFR28_00888 at 961.227 kb on + strand, within PFR28_00888 at 961.227 kb on + strand, within PFR28_00888 at 961.228 kb on - strand, within PFR28_00888 at 961.240 kb on + strand, within PFR28_00888 at 961.241 kb on - strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.360 kb on + strand, within PFR28_00888 at 961.361 kb on - strand, within PFR28_00888 at 961.361 kb on - strand, within PFR28_00888 at 961.361 kb on - strand, within PFR28_00888 at 961.361 kb on - strand, within PFR28_00888 at 961.361 kb on - strand, within PFR28_00888 at 961.393 kb on + strand, within PFR28_00888 at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.523 kb on + strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.524 kb on - strand at 961.612 kb on + strand at 961.612 kb on + strand at 961.612 kb on + strand at 961.613 kb on - strand at 961.613 kb on - strand at 961.613 kb on - strand at 961.620 kb on + strand at 961.688 kb on + strand at 962.149 kb on - strand, within PFR28_00889 at 962.149 kb on - strand, within PFR28_00889 at 962.346 kb on - strand, within PFR28_00889 at 962.415 kb on + strand, within PFR28_00889
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine (C) remove 959,560 + PFR28_00886 0.57 +2.1 959,560 + PFR28_00886 0.57 -1.4 959,560 + PFR28_00886 0.57 +1.1 959,560 + PFR28_00886 0.57 -1.9 959,560 + PFR28_00886 0.57 +0.0 959,560 + PFR28_00886 0.57 -0.4 959,560 + PFR28_00886 0.57 +0.4 959,560 + PFR28_00886 0.57 -0.2 959,560 + PFR28_00886 0.57 +0.2 959,560 + PFR28_00886 0.57 -1.0 959,560 + PFR28_00886 0.57 -3.6 959,560 + PFR28_00886 0.57 -2.6 959,560 + PFR28_00886 0.57 -0.7 959,560 + PFR28_00886 0.57 -0.9 959,560 + PFR28_00886 0.57 +1.1 959,560 + PFR28_00886 0.57 -1.1 959,561 - PFR28_00886 0.57 +0.8 959,561 - PFR28_00886 0.57 +2.0 959,561 - PFR28_00886 0.57 -2.2 959,561 - PFR28_00886 0.57 -1.3 959,561 - PFR28_00886 0.57 -1.9 959,823 - PFR28_00886 0.79 +3.8 959,823 - PFR28_00886 0.79 -0.7 959,823 - PFR28_00886 0.79 -0.5 959,860 + PFR28_00886 0.82 -1.8 959,861 - PFR28_00886 0.82 -0.9 959,861 - PFR28_00886 0.82 -0.3 959,896 + PFR28_00886 0.85 -0.1 959,896 + PFR28_00886 0.85 -4.1 959,896 + PFR28_00886 0.85 +0.0 959,896 + PFR28_00886 0.85 +1.5 959,896 + PFR28_00886 0.85 +2.6 959,896 + PFR28_00886 0.85 -0.8 959,896 + PFR28_00886 0.85 +0.9 959,896 + PFR28_00886 0.85 +0.6 959,896 + PFR28_00886 0.85 -0.3 959,897 - PFR28_00886 0.85 +0.7 960,002 - +1.3 960,023 + -2.4 960,023 + -3.3 960,023 + -3.1 960,023 + -1.4 960,023 + -0.0 960,023 + -0.2 960,023 + +0.5 960,023 + +1.2 960,023 + +0.5 960,023 + +1.5 960,024 - +0.6 960,024 - -1.0 960,024 - -1.4 960,024 - -2.1 960,024 - -1.8 960,024 - +0.4 960,024 - -0.2 960,130 + +1.2 960,131 - -1.5 960,138 + +0.2 960,138 + -0.3 960,139 - -0.3 960,139 - -3.5 960,195 + PFR28_00887 0.19 -0.6 960,196 - PFR28_00887 0.20 +0.7 960,197 + PFR28_00887 0.20 -1.6 960,197 + PFR28_00887 0.20 -1.9 960,197 + PFR28_00887 0.20 -0.2 960,198 - PFR28_00887 0.21 -1.4 960,198 - PFR28_00887 0.21 +0.9 960,198 - PFR28_00887 0.21 +0.2 960,198 - PFR28_00887 0.21 +0.3 960,198 - PFR28_00887 0.21 -0.0 960,198 - PFR28_00887 0.21 +1.5 960,272 + PFR28_00887 0.58 -1.1 960,273 - PFR28_00887 0.59 -0.8 960,390 + -0.1 960,391 - +0.9 960,391 - +0.4 960,391 - -1.0 960,444 - +1.5 960,501 + -0.3 960,501 + -0.2 960,501 + +1.2 960,501 + +1.6 960,502 - +2.8 960,502 - -1.2 960,502 - +0.3 960,502 - -0.8 960,502 - +0.2 960,502 - -2.2 960,506 + -0.4 960,506 + +1.2 960,506 + +1.0 960,506 + +0.2 960,507 - -0.5 960,507 - -2.9 960,507 - +0.6 960,507 - -2.5 960,565 + +4.2 960,565 + -2.1 960,565 + -1.9 960,566 - -1.7 960,566 - +0.3 960,566 - +1.1 960,566 - -3.4 960,566 - +1.8 960,566 - -1.9 960,703 + PFR28_00888 0.17 +0.6 960,703 + PFR28_00888 0.17 +1.3 960,703 + PFR28_00888 0.17 -2.8 960,703 + PFR28_00888 0.17 +0.4 960,704 - PFR28_00888 0.17 -0.6 960,704 - PFR28_00888 0.17 +1.8 960,704 - PFR28_00888 0.17 +1.2 960,704 - PFR28_00888 0.17 -1.6 960,799 + PFR28_00888 0.27 -1.4 960,799 + PFR28_00888 0.27 +0.6 960,799 + PFR28_00888 0.27 -1.0 960,799 + PFR28_00888 0.27 -1.4 960,799 + PFR28_00888 0.27 -2.3 960,800 - PFR28_00888 0.27 +0.1 960,800 - PFR28_00888 0.27 -0.6 960,800 - PFR28_00888 0.27 +0.1 960,800 - PFR28_00888 0.27 -0.9 960,800 - PFR28_00888 0.27 +1.1 960,800 - PFR28_00888 0.27 -0.2 960,800 - PFR28_00888 0.27 +1.9 960,808 + PFR28_00888 0.28 +0.2 960,808 + PFR28_00888 0.28 -3.5 960,809 - PFR28_00888 0.28 -0.9 960,809 - PFR28_00888 0.28 -0.1 960,809 - PFR28_00888 0.28 -0.7 961,012 + PFR28_00888 0.49 +3.3 961,012 + PFR28_00888 0.49 +2.3 961,012 + PFR28_00888 0.49 -3.3 961,012 + PFR28_00888 0.49 -2.3 961,013 - PFR28_00888 0.49 +1.0 961,013 - PFR28_00888 0.49 -0.7 961,064 - PFR28_00888 0.55 -2.6 961,064 - PFR28_00888 0.55 -1.9 961,126 + PFR28_00888 0.61 -1.7 961,126 + PFR28_00888 0.61 +0.6 961,126 + PFR28_00888 0.61 -0.0 961,126 + PFR28_00888 0.61 -0.0 961,126 + PFR28_00888 0.61 -0.4 961,126 + PFR28_00888 0.61 -1.9 961,127 - PFR28_00888 0.61 -1.6 961,127 - PFR28_00888 0.61 +1.1 961,160 + PFR28_00888 0.65 -0.4 961,160 + PFR28_00888 0.65 +0.6 961,160 + PFR28_00888 0.65 -3.5 961,160 + PFR28_00888 0.65 +1.1 961,160 + PFR28_00888 0.65 -1.0 961,160 + PFR28_00888 0.65 +0.6 961,160 + PFR28_00888 0.65 -0.3 961,160 + PFR28_00888 0.65 -3.5 961,161 - PFR28_00888 0.65 +0.6 961,161 - PFR28_00888 0.65 -1.0 961,161 - PFR28_00888 0.65 -0.4 961,161 - PFR28_00888 0.65 -3.1 961,161 - PFR28_00888 0.65 -2.2 961,161 - PFR28_00888 0.65 -2.3 961,161 - PFR28_00888 0.65 -0.7 961,161 - PFR28_00888 0.65 -1.7 961,227 + PFR28_00888 0.72 +0.9 961,227 + PFR28_00888 0.72 -1.2 961,227 + PFR28_00888 0.72 -0.9 961,228 - PFR28_00888 0.72 +1.7 961,240 + PFR28_00888 0.73 -2.2 961,241 - PFR28_00888 0.73 -1.4 961,360 + PFR28_00888 0.85 +1.5 961,360 + PFR28_00888 0.85 +1.3 961,360 + PFR28_00888 0.85 -1.6 961,360 + PFR28_00888 0.85 -2.1 961,360 + PFR28_00888 0.85 +2.5 961,360 + PFR28_00888 0.85 +2.6 961,360 + PFR28_00888 0.85 -1.7 961,361 - PFR28_00888 0.85 +0.8 961,361 - PFR28_00888 0.85 -0.4 961,361 - PFR28_00888 0.85 -0.1 961,361 - PFR28_00888 0.85 -2.1 961,361 - PFR28_00888 0.85 -0.2 961,393 + PFR28_00888 0.89 -0.1 961,523 + -1.6 961,523 + +2.1 961,523 + -2.2 961,523 + -0.5 961,523 + -0.7 961,523 + -3.4 961,523 + -2.6 961,523 + -0.1 961,523 + -3.3 961,523 + -1.8 961,524 - -0.4 961,524 - -0.1 961,524 - -1.6 961,524 - +0.6 961,524 - +0.0 961,524 - -2.4 961,524 - +1.6 961,524 - +2.2 961,524 - -1.2 961,612 + +0.4 961,612 + -0.4 961,612 + -1.8 961,613 - +1.3 961,613 - +1.3 961,613 - -3.4 961,620 + +0.4 961,688 + +1.4 962,149 - PFR28_00889 0.41 -2.5 962,149 - PFR28_00889 0.41 -0.2 962,346 - PFR28_00889 0.55 -1.3 962,415 + PFR28_00889 0.60 -1.0
Or see this region's nucleotide sequence