Strain Fitness in Pseudomonas sp. RS175 around PFR28_00148

Experiment: Guanosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00147 and PFR28_00148 are separated by 170 nucleotidesPFR28_00148 and PFR28_00149 overlap by 4 nucleotides PFR28_00147: PFR28_00147 - hypothetical protein, at 171,931 to 172,890 _00147 PFR28_00148: PFR28_00148 - hypothetical protein, at 173,061 to 173,441 _00148 PFR28_00149: PFR28_00149 - hypothetical protein, at 173,438 to 174,571 _00149 Position (kb) 173 174Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 172.111 kb on + strand, within PFR28_00147at 172.111 kb on + strand, within PFR28_00147at 172.111 kb on + strand, within PFR28_00147at 172.168 kb on + strand, within PFR28_00147at 172.168 kb on + strand, within PFR28_00147at 172.168 kb on + strand, within PFR28_00147at 172.168 kb on + strand, within PFR28_00147at 172.169 kb on - strand, within PFR28_00147at 172.169 kb on - strand, within PFR28_00147at 172.245 kb on - strand, within PFR28_00147at 172.291 kb on + strand, within PFR28_00147at 172.291 kb on + strand, within PFR28_00147at 172.291 kb on + strand, within PFR28_00147at 172.291 kb on + strand, within PFR28_00147at 172.292 kb on - strand, within PFR28_00147at 172.292 kb on - strand, within PFR28_00147at 172.292 kb on - strand, within PFR28_00147at 172.292 kb on - strand, within PFR28_00147at 172.345 kb on + strand, within PFR28_00147at 172.345 kb on + strand, within PFR28_00147at 172.360 kb on + strand, within PFR28_00147at 172.396 kb on + strand, within PFR28_00147at 172.396 kb on + strand, within PFR28_00147at 172.396 kb on + strand, within PFR28_00147at 172.397 kb on - strand, within PFR28_00147at 172.399 kb on + strand, within PFR28_00147at 172.400 kb on - strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.483 kb on + strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.484 kb on - strand, within PFR28_00147at 172.599 kb on + strand, within PFR28_00147at 172.599 kb on + strand, within PFR28_00147at 172.600 kb on - strand, within PFR28_00147at 172.620 kb on - strand, within PFR28_00147at 172.689 kb on + strand, within PFR28_00147at 172.689 kb on + strand, within PFR28_00147at 172.693 kb on + strand, within PFR28_00147at 172.693 kb on + strand, within PFR28_00147at 172.693 kb on + strand, within PFR28_00147at 172.694 kb on - strand, within PFR28_00147at 172.778 kb on - strand, within PFR28_00147at 172.832 kb on - strandat 172.832 kb on - strandat 172.937 kb on + strandat 172.937 kb on + strandat 172.938 kb on - strandat 172.938 kb on - strandat 172.938 kb on - strandat 172.938 kb on - strandat 172.998 kb on - strandat 172.998 kb on - strandat 173.077 kb on + strandat 173.078 kb on - strandat 173.081 kb on + strandat 173.081 kb on + strandat 173.081 kb on + strandat 173.081 kb on + strandat 173.081 kb on + strandat 173.082 kb on - strandat 173.137 kb on + strand, within PFR28_00148at 173.138 kb on - strand, within PFR28_00148at 173.138 kb on - strand, within PFR28_00148at 173.180 kb on + strand, within PFR28_00148at 173.490 kb on + strandat 173.490 kb on + strandat 173.490 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.523 kb on + strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.524 kb on - strandat 173.595 kb on + strand, within PFR28_00149at 173.595 kb on + strand, within PFR28_00149at 173.596 kb on - strand, within PFR28_00149at 173.596 kb on - strand, within PFR28_00149at 173.604 kb on + strand, within PFR28_00149at 173.605 kb on - strand, within PFR28_00149at 173.655 kb on + strand, within PFR28_00149at 173.955 kb on - strand, within PFR28_00149at 174.096 kb on + strand, within PFR28_00149at 174.096 kb on + strand, within PFR28_00149at 174.096 kb on + strand, within PFR28_00149at 174.096 kb on + strand, within PFR28_00149at 174.097 kb on - strand, within PFR28_00149

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine (C)
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172,111 + PFR28_00147 0.19 +0.9
172,111 + PFR28_00147 0.19 +0.7
172,111 + PFR28_00147 0.19 -1.0
172,168 + PFR28_00147 0.25 +1.0
172,168 + PFR28_00147 0.25 +0.6
172,168 + PFR28_00147 0.25 +0.9
172,168 + PFR28_00147 0.25 -0.1
172,169 - PFR28_00147 0.25 -3.7
172,169 - PFR28_00147 0.25 -1.6
172,245 - PFR28_00147 0.33 +0.9
172,291 + PFR28_00147 0.38 -2.3
172,291 + PFR28_00147 0.38 +0.8
172,291 + PFR28_00147 0.38 -0.8
172,291 + PFR28_00147 0.38 -0.5
172,292 - PFR28_00147 0.38 -0.9
172,292 - PFR28_00147 0.38 +3.4
172,292 - PFR28_00147 0.38 -0.5
172,292 - PFR28_00147 0.38 +1.6
172,345 + PFR28_00147 0.43 +0.0
172,345 + PFR28_00147 0.43 -2.0
172,360 + PFR28_00147 0.45 +0.9
172,396 + PFR28_00147 0.48 -1.9
172,396 + PFR28_00147 0.48 +1.1
172,396 + PFR28_00147 0.48 -1.1
172,397 - PFR28_00147 0.49 +0.4
172,399 + PFR28_00147 0.49 +1.3
172,400 - PFR28_00147 0.49 -3.3
172,483 + PFR28_00147 0.57 +1.3
172,483 + PFR28_00147 0.57 +2.3
172,483 + PFR28_00147 0.57 +2.7
172,483 + PFR28_00147 0.57 -0.5
172,483 + PFR28_00147 0.57 -1.4
172,483 + PFR28_00147 0.57 +0.0
172,483 + PFR28_00147 0.57 +2.0
172,483 + PFR28_00147 0.57 -0.3
172,483 + PFR28_00147 0.57 -0.8
172,484 - PFR28_00147 0.58 -0.3
172,484 - PFR28_00147 0.58 -0.9
172,484 - PFR28_00147 0.58 +1.1
172,484 - PFR28_00147 0.58 -1.0
172,484 - PFR28_00147 0.58 +2.1
172,484 - PFR28_00147 0.58 -2.0
172,484 - PFR28_00147 0.58 -1.5
172,484 - PFR28_00147 0.58 +0.6
172,484 - PFR28_00147 0.58 +1.0
172,484 - PFR28_00147 0.58 -0.4
172,484 - PFR28_00147 0.58 +2.6
172,484 - PFR28_00147 0.58 -2.6
172,484 - PFR28_00147 0.58 +2.8
172,484 - PFR28_00147 0.58 -0.8
172,599 + PFR28_00147 0.70 +1.4
172,599 + PFR28_00147 0.70 +1.7
172,600 - PFR28_00147 0.70 -0.2
172,620 - PFR28_00147 0.72 +1.2
172,689 + PFR28_00147 0.79 +0.8
172,689 + PFR28_00147 0.79 -1.2
172,693 + PFR28_00147 0.79 +0.5
172,693 + PFR28_00147 0.79 -1.9
172,693 + PFR28_00147 0.79 -2.2
172,694 - PFR28_00147 0.79 -1.9
172,778 - PFR28_00147 0.88 +0.9
172,832 - -1.1
172,832 - -1.9
172,937 + -1.4
172,937 + -1.8
172,938 - -1.5
172,938 - -0.5
172,938 - -0.5
172,938 - +0.5
172,998 - +1.3
172,998 - -0.6
173,077 + +1.2
173,078 - +5.1
173,081 + +1.1
173,081 + +1.1
173,081 + +0.0
173,081 + -2.3
173,081 + +0.3
173,082 - +1.2
173,137 + PFR28_00148 0.20 +0.5
173,138 - PFR28_00148 0.20 -1.3
173,138 - PFR28_00148 0.20 +1.7
173,180 + PFR28_00148 0.31 +1.8
173,490 + +1.2
173,490 + -2.8
173,490 + +0.3
173,523 + -3.1
173,523 + -2.5
173,523 + -0.8
173,523 + +0.8
173,523 + -0.5
173,523 + -1.3
173,523 + -3.8
173,523 + -1.4
173,523 + +1.1
173,523 + -0.8
173,523 + +1.7
173,523 + +0.9
173,524 - +0.9
173,524 - -0.5
173,524 - -1.2
173,524 - -2.3
173,524 - -2.4
173,524 - +0.1
173,524 - -0.2
173,595 + PFR28_00149 0.14 +0.9
173,595 + PFR28_00149 0.14 -1.3
173,596 - PFR28_00149 0.14 +0.6
173,596 - PFR28_00149 0.14 -2.3
173,604 + PFR28_00149 0.15 +0.4
173,605 - PFR28_00149 0.15 +0.7
173,655 + PFR28_00149 0.19 +1.1
173,955 - PFR28_00149 0.46 -0.9
174,096 + PFR28_00149 0.58 -0.7
174,096 + PFR28_00149 0.58 +3.0
174,096 + PFR28_00149 0.58 +1.0
174,096 + PFR28_00149 0.58 +2.0
174,097 - PFR28_00149 0.58 +0.6

Or see this region's nucleotide sequence