Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18080

Experiment: R2A with 3-octanone 5.3129 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotidesABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotidesABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621 _RS18075 ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022 _RS18080 ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565 _RS18085 ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558 _RS18090 Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3725.369 kb on + strand, within ABIE41_RS18075at 3725.478 kb on + strandat 3725.479 kb on - strandat 3725.479 kb on - strandat 3725.672 kb on + strandat 3725.760 kb on + strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.318 kb on + strand, within ABIE41_RS18085at 3726.772 kb on - strand, within ABIE41_RS18090at 3726.891 kb on + strand, within ABIE41_RS18090at 3726.970 kb on - strand, within ABIE41_RS18090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
remove
3,725,369 + ABIE41_RS18075 0.82 +1.0
3,725,478 + +0.1
3,725,479 - -2.6
3,725,479 - +1.1
3,725,672 + +0.4
3,725,760 + ABIE41_RS18080 0.30 +5.1
3,725,761 - ABIE41_RS18080 0.30 -0.3
3,725,761 - ABIE41_RS18080 0.30 -0.2
3,725,761 - ABIE41_RS18080 0.30 -0.4
3,725,849 + ABIE41_RS18080 0.54 -0.7
3,725,849 + ABIE41_RS18080 0.54 +0.5
3,725,931 - ABIE41_RS18080 0.75 -1.9
3,725,931 - ABIE41_RS18080 0.75 -1.7
3,726,235 - ABIE41_RS18085 0.37 -0.3
3,726,235 - ABIE41_RS18085 0.37 -1.7
3,726,318 + ABIE41_RS18085 0.53 -1.0
3,726,772 - ABIE41_RS18090 0.20 -0.4
3,726,891 + ABIE41_RS18090 0.32 +1.5
3,726,970 - ABIE41_RS18090 0.40 +0.5

Or see this region's nucleotide sequence