Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11970

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11965 and ABIE41_RS11970 overlap by 4 nucleotidesABIE41_RS11970 and ABIE41_RS11975 are separated by 243 nucleotides ABIE41_RS11965: ABIE41_RS11965 - ABC-F family ATP-binding cassette domain-containing protein, at 2,444,479 to 2,446,101 _RS11965 ABIE41_RS11970: ABIE41_RS11970 - prephenate dehydrogenase, at 2,446,098 to 2,446,967 _RS11970 ABIE41_RS11975: ABIE41_RS11975 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 2,447,211 to 2,448,419 _RS11975 Position (kb) 2446 2447Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2445.101 kb on + strand, within ABIE41_RS11965at 2445.214 kb on - strand, within ABIE41_RS11965at 2445.365 kb on + strand, within ABIE41_RS11965at 2445.365 kb on + strand, within ABIE41_RS11965at 2445.375 kb on - strand, within ABIE41_RS11965at 2445.386 kb on + strand, within ABIE41_RS11965at 2445.387 kb on - strand, within ABIE41_RS11965at 2445.699 kb on - strand, within ABIE41_RS11965at 2445.900 kb on - strand, within ABIE41_RS11965at 2446.077 kb on + strandat 2446.127 kb on + strandat 2446.127 kb on + strandat 2446.128 kb on - strandat 2446.128 kb on - strandat 2446.128 kb on - strandat 2446.128 kb on - strandat 2446.140 kb on + strandat 2447.043 kb on + strandat 2447.044 kb on - strandat 2447.044 kb on - strandat 2447.044 kb on - strandat 2447.076 kb on + strandat 2447.076 kb on + strandat 2447.077 kb on - strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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2,445,101 + ABIE41_RS11965 0.38 -1.7
2,445,214 - ABIE41_RS11965 0.45 -0.4
2,445,365 + ABIE41_RS11965 0.55 +0.7
2,445,365 + ABIE41_RS11965 0.55 -0.3
2,445,375 - ABIE41_RS11965 0.55 +1.1
2,445,386 + ABIE41_RS11965 0.56 -2.5
2,445,387 - ABIE41_RS11965 0.56 +0.5
2,445,699 - ABIE41_RS11965 0.75 +1.0
2,445,900 - ABIE41_RS11965 0.88 -0.1
2,446,077 + +0.1
2,446,127 + -0.3
2,446,127 + -0.4
2,446,128 - -1.2
2,446,128 - -0.2
2,446,128 - -0.1
2,446,128 - +1.3
2,446,140 + -0.7
2,447,043 + +0.4
2,447,044 - +0.7
2,447,044 - +3.3
2,447,044 - -2.4
2,447,076 + -1.1
2,447,076 + +0.5
2,447,077 - -0.5
2,447,079 + +0.7
2,447,079 + -0.4
2,447,079 + -0.2
2,447,079 + -0.9
2,447,080 - +0.8

Or see this region's nucleotide sequence