Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09005

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09000 and ABIE41_RS09005 are separated by 127 nucleotidesABIE41_RS09005 and ABIE41_RS09010 are separated by 2 nucleotidesABIE41_RS09010 and ABIE41_RS09015 are separated by 117 nucleotides ABIE41_RS09000: ABIE41_RS09000 - cytosine deaminase, at 1,864,544 to 1,865,872 _RS09000 ABIE41_RS09005: ABIE41_RS09005 - FAD-binding oxidoreductase, at 1,866,000 to 1,867,424 _RS09005 ABIE41_RS09010: ABIE41_RS09010 - NAD(P)H-dependent oxidoreductase, at 1,867,427 to 1,868,008 _RS09010 ABIE41_RS09015: ABIE41_RS09015 - MarR family transcriptional regulator, at 1,868,126 to 1,868,608 _RS09015 Position (kb) 1865 1866 1867 1868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1866.012 kb on + strandat 1866.252 kb on + strand, within ABIE41_RS09005at 1866.252 kb on + strand, within ABIE41_RS09005at 1866.252 kb on + strand, within ABIE41_RS09005at 1866.337 kb on - strand, within ABIE41_RS09005at 1866.337 kb on - strand, within ABIE41_RS09005at 1866.426 kb on + strand, within ABIE41_RS09005at 1866.427 kb on - strand, within ABIE41_RS09005at 1866.654 kb on + strand, within ABIE41_RS09005at 1866.654 kb on + strand, within ABIE41_RS09005at 1866.655 kb on - strand, within ABIE41_RS09005at 1866.655 kb on - strand, within ABIE41_RS09005at 1866.786 kb on + strand, within ABIE41_RS09005at 1866.787 kb on - strand, within ABIE41_RS09005at 1866.876 kb on + strand, within ABIE41_RS09005at 1867.020 kb on + strand, within ABIE41_RS09005at 1867.020 kb on + strand, within ABIE41_RS09005at 1867.020 kb on + strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.021 kb on - strand, within ABIE41_RS09005at 1867.035 kb on + strand, within ABIE41_RS09005at 1867.035 kb on + strand, within ABIE41_RS09005at 1867.036 kb on - strand, within ABIE41_RS09005at 1867.200 kb on - strand, within ABIE41_RS09005at 1867.242 kb on + strand, within ABIE41_RS09005at 1867.242 kb on + strand, within ABIE41_RS09005at 1867.362 kb on + strandat 1867.363 kb on - strandat 1867.368 kb on + strandat 1867.368 kb on + strandat 1867.368 kb on + strandat 1867.369 kb on - strandat 1867.369 kb on - strandat 1867.469 kb on + strandat 1867.469 kb on + strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.470 kb on - strandat 1867.545 kb on - strand, within ABIE41_RS09010at 1867.545 kb on - strand, within ABIE41_RS09010at 1867.632 kb on - strand, within ABIE41_RS09010at 1867.818 kb on - strand, within ABIE41_RS09010at 1867.919 kb on + strand, within ABIE41_RS09010at 1867.931 kb on + strand, within ABIE41_RS09010at 1867.931 kb on + strand, within ABIE41_RS09010at 1867.932 kb on - strand, within ABIE41_RS09010at 1867.932 kb on - strand, within ABIE41_RS09010at 1868.088 kb on - strandat 1868.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,865,165 + ABIE41_RS09000 0.47 +0.0
1,865,165 + ABIE41_RS09000 0.47 -1.9
1,865,165 + ABIE41_RS09000 0.47 -0.1
1,865,166 - ABIE41_RS09000 0.47 +0.4
1,865,166 - ABIE41_RS09000 0.47 +0.4
1,865,444 + ABIE41_RS09000 0.68 -0.6
1,865,444 + ABIE41_RS09000 0.68 +1.6
1,865,444 + ABIE41_RS09000 0.68 +0.2
1,865,444 + ABIE41_RS09000 0.68 +0.0
1,865,444 + ABIE41_RS09000 0.68 +1.1
1,865,444 + ABIE41_RS09000 0.68 -2.2
1,865,445 - ABIE41_RS09000 0.68 +1.2
1,865,445 - ABIE41_RS09000 0.68 +0.1
1,865,445 - ABIE41_RS09000 0.68 +1.2
1,865,445 - ABIE41_RS09000 0.68 +1.2
1,865,445 - ABIE41_RS09000 0.68 -2.4
1,865,445 - ABIE41_RS09000 0.68 +0.5
1,865,445 - ABIE41_RS09000 0.68 +1.3
1,865,445 - ABIE41_RS09000 0.68 -2.8
1,865,445 - ABIE41_RS09000 0.68 +1.0
1,865,445 - ABIE41_RS09000 0.68 -3.1
1,865,564 + ABIE41_RS09000 0.77 +0.2
1,865,564 + ABIE41_RS09000 0.77 -0.8
1,865,564 + ABIE41_RS09000 0.77 -0.1
1,865,564 + ABIE41_RS09000 0.77 +0.3
1,865,564 + ABIE41_RS09000 0.77 -0.2
1,865,565 - ABIE41_RS09000 0.77 -1.5
1,865,565 - ABIE41_RS09000 0.77 +0.4
1,865,565 - ABIE41_RS09000 0.77 +1.9
1,866,012 + -0.1
1,866,252 + ABIE41_RS09005 0.18 -0.2
1,866,252 + ABIE41_RS09005 0.18 +1.8
1,866,252 + ABIE41_RS09005 0.18 +0.2
1,866,337 - ABIE41_RS09005 0.24 +2.4
1,866,337 - ABIE41_RS09005 0.24 -0.2
1,866,426 + ABIE41_RS09005 0.30 -3.0
1,866,427 - ABIE41_RS09005 0.30 +0.7
1,866,654 + ABIE41_RS09005 0.46 -0.3
1,866,654 + ABIE41_RS09005 0.46 +1.4
1,866,655 - ABIE41_RS09005 0.46 -0.4
1,866,655 - ABIE41_RS09005 0.46 +0.9
1,866,786 + ABIE41_RS09005 0.55 +0.0
1,866,787 - ABIE41_RS09005 0.55 -0.4
1,866,876 + ABIE41_RS09005 0.61 +1.0
1,867,020 + ABIE41_RS09005 0.72 +1.2
1,867,020 + ABIE41_RS09005 0.72 -3.6
1,867,020 + ABIE41_RS09005 0.72 -0.6
1,867,021 - ABIE41_RS09005 0.72 +1.6
1,867,021 - ABIE41_RS09005 0.72 -2.8
1,867,021 - ABIE41_RS09005 0.72 +0.4
1,867,021 - ABIE41_RS09005 0.72 +0.2
1,867,021 - ABIE41_RS09005 0.72 +0.3
1,867,021 - ABIE41_RS09005 0.72 -1.2
1,867,035 + ABIE41_RS09005 0.73 -3.5
1,867,035 + ABIE41_RS09005 0.73 +2.4
1,867,036 - ABIE41_RS09005 0.73 +0.6
1,867,200 - ABIE41_RS09005 0.84 -1.0
1,867,242 + ABIE41_RS09005 0.87 +0.0
1,867,242 + ABIE41_RS09005 0.87 +0.6
1,867,362 + -0.4
1,867,363 - -0.4
1,867,368 + +0.2
1,867,368 + +0.6
1,867,368 + -1.7
1,867,369 - -1.1
1,867,369 - -0.4
1,867,469 + -0.0
1,867,469 + -2.3
1,867,470 - -1.2
1,867,470 - +0.2
1,867,470 - +0.0
1,867,470 - +1.6
1,867,470 - -1.0
1,867,470 - -0.5
1,867,470 - -1.9
1,867,545 - ABIE41_RS09010 0.20 +1.7
1,867,545 - ABIE41_RS09010 0.20 -1.0
1,867,632 - ABIE41_RS09010 0.35 +2.3
1,867,818 - ABIE41_RS09010 0.67 +0.6
1,867,919 + ABIE41_RS09010 0.85 -3.2
1,867,931 + ABIE41_RS09010 0.87 -1.4
1,867,931 + ABIE41_RS09010 0.87 +2.6
1,867,932 - ABIE41_RS09010 0.87 +0.2
1,867,932 - ABIE41_RS09010 0.87 +0.6
1,868,088 - -0.1
1,868,088 - -0.8

Or see this region's nucleotide sequence