Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04620 and ABIE41_RS04625 overlap by 4 nucleotides ABIE41_RS04625 and ABIE41_RS04630 are separated by 242 nucleotides ABIE41_RS04630 and ABIE41_RS04635 are separated by 143 nucleotides
ABIE41_RS04620: ABIE41_RS04620 - MltA domain-containing protein, at 963,143 to 964,321
_RS04620
ABIE41_RS04625: ABIE41_RS04625 - Tim44/TimA family putative adaptor protein, at 964,318 to 965,046
_RS04625
ABIE41_RS04630: ABIE41_RS04630 - protein-export chaperone SecB, at 965,289 to 965,780
_RS04630
ABIE41_RS04635: ABIE41_RS04635 - TerC family protein, at 965,924 to 966,667
_RS04635
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 963.374 kb on - strand, within ABIE41_RS04620 at 963.374 kb on - strand, within ABIE41_RS04620 at 963.609 kb on + strand, within ABIE41_RS04620 at 963.609 kb on + strand, within ABIE41_RS04620 at 963.609 kb on + strand, within ABIE41_RS04620 at 963.609 kb on + strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.610 kb on - strand, within ABIE41_RS04620 at 963.888 kb on + strand, within ABIE41_RS04620 at 963.889 kb on - strand, within ABIE41_RS04620 at 963.889 kb on - strand, within ABIE41_RS04620 at 963.889 kb on - strand, within ABIE41_RS04620 at 964.613 kb on + strand, within ABIE41_RS04625 at 964.613 kb on + strand, within ABIE41_RS04625 at 964.614 kb on - strand, within ABIE41_RS04625 at 964.614 kb on - strand, within ABIE41_RS04625 at 964.685 kb on + strand, within ABIE41_RS04625 at 964.685 kb on + strand, within ABIE41_RS04625 at 965.072 kb on + strand at 965.072 kb on + strand at 965.072 kb on + strand at 965.072 kb on + strand at 965.072 kb on + strand at 965.072 kb on + strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.073 kb on - strand at 965.107 kb on + strand at 965.116 kb on + strand at 965.127 kb on - strand at 965.127 kb on - strand at 965.127 kb on - strand at 965.127 kb on - strand at 965.127 kb on - strand at 965.134 kb on + strand at 965.135 kb on - strand at 965.727 kb on + strand, within ABIE41_RS04630 at 965.728 kb on - strand, within ABIE41_RS04630 at 965.930 kb on + strand at 965.930 kb on + strand at 965.931 kb on - strand at 965.931 kb on - strand at 965.931 kb on - strand at 965.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 963,374 - ABIE41_RS04620 0.20 +0.7 963,374 - ABIE41_RS04620 0.20 +0.7 963,609 + ABIE41_RS04620 0.40 -2.7 963,609 + ABIE41_RS04620 0.40 +0.7 963,609 + ABIE41_RS04620 0.40 +0.1 963,609 + ABIE41_RS04620 0.40 +0.2 963,610 - ABIE41_RS04620 0.40 -0.8 963,610 - ABIE41_RS04620 0.40 -0.9 963,610 - ABIE41_RS04620 0.40 +0.4 963,610 - ABIE41_RS04620 0.40 -0.2 963,610 - ABIE41_RS04620 0.40 +0.7 963,610 - ABIE41_RS04620 0.40 -1.4 963,610 - ABIE41_RS04620 0.40 -1.9 963,610 - ABIE41_RS04620 0.40 +1.7 963,610 - ABIE41_RS04620 0.40 +0.4 963,888 + ABIE41_RS04620 0.63 -0.7 963,889 - ABIE41_RS04620 0.63 -0.8 963,889 - ABIE41_RS04620 0.63 -1.2 963,889 - ABIE41_RS04620 0.63 +0.7 964,613 + ABIE41_RS04625 0.40 -1.0 964,613 + ABIE41_RS04625 0.40 -2.1 964,614 - ABIE41_RS04625 0.41 -1.6 964,614 - ABIE41_RS04625 0.41 -1.0 964,685 + ABIE41_RS04625 0.50 +0.6 964,685 + ABIE41_RS04625 0.50 +0.9 965,072 + -1.0 965,072 + +0.7 965,072 + -1.1 965,072 + -1.9 965,072 + -0.6 965,072 + -0.0 965,073 - +0.0 965,073 - -0.9 965,073 - -0.0 965,073 - -0.6 965,073 - -1.2 965,073 - -0.2 965,073 - -0.7 965,073 - -2.6 965,073 - -1.1 965,107 + -1.6 965,116 + -0.1 965,127 - -0.6 965,127 - -1.7 965,127 - +0.5 965,127 - +1.9 965,127 - +0.4 965,134 + -0.7 965,135 - -0.1 965,727 + ABIE41_RS04630 0.89 +0.4 965,728 - ABIE41_RS04630 0.89 -0.9 965,930 + -0.9 965,930 + -0.4 965,931 - -0.3 965,931 - +0.1 965,931 - +0.0 965,931 - +1.3
Or see this region's nucleotide sequence