Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03820

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03810 and ABIE41_RS03815 are separated by 4 nucleotidesABIE41_RS03815 and ABIE41_RS03820 are separated by 54 nucleotidesABIE41_RS03820 and ABIE41_RS03825 are separated by 51 nucleotidesABIE41_RS03825 and ABIE41_RS03830 are separated by 81 nucleotides ABIE41_RS03810: ABIE41_RS03810 - imidazole glycerol phosphate synthase subunit HisF, at 792,693 to 793,454 _RS03810 ABIE41_RS03815: ABIE41_RS03815 - phosphoribosyl-ATP diphosphatase, at 793,459 to 793,776 _RS03815 ABIE41_RS03820: ABIE41_RS03820 - type I pantothenate kinase, at 793,831 to 794,805 _RS03820 ABIE41_RS03825: ABIE41_RS03825 - VTT domain-containing protein, at 794,857 to 795,303 _RS03825 ABIE41_RS03830: ABIE41_RS03830 - RidA family protein, at 795,385 to 795,735 _RS03830 Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 793.239 kb on + strand, within ABIE41_RS03810at 793.392 kb on + strandat 793.392 kb on + strandat 793.392 kb on + strandat 793.392 kb on + strandat 793.392 kb on + strandat 793.392 kb on + strandat 793.393 kb on - strandat 793.395 kb on - strandat 793.655 kb on + strand, within ABIE41_RS03815at 793.655 kb on + strand, within ABIE41_RS03815at 793.655 kb on + strand, within ABIE41_RS03815at 793.656 kb on - strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.660 kb on + strand, within ABIE41_RS03815at 793.661 kb on - strand, within ABIE41_RS03815at 793.676 kb on + strand, within ABIE41_RS03815at 793.676 kb on + strand, within ABIE41_RS03815at 793.676 kb on + strand, within ABIE41_RS03815at 793.677 kb on - strand, within ABIE41_RS03815at 793.677 kb on - strand, within ABIE41_RS03815at 793.677 kb on - strand, within ABIE41_RS03815at 793.788 kb on + strandat 794.803 kb on + strandat 794.803 kb on + strandat 794.803 kb on + strandat 794.804 kb on - strandat 794.804 kb on - strandat 795.204 kb on + strand, within ABIE41_RS03825at 795.205 kb on - strand, within ABIE41_RS03825at 795.205 kb on - strand, within ABIE41_RS03825at 795.214 kb on + strand, within ABIE41_RS03825at 795.214 kb on + strand, within ABIE41_RS03825at 795.214 kb on + strand, within ABIE41_RS03825at 795.215 kb on - strand, within ABIE41_RS03825at 795.215 kb on - strand, within ABIE41_RS03825at 795.215 kb on - strand, within ABIE41_RS03825at 795.215 kb on - strand, within ABIE41_RS03825at 795.265 kb on + strandat 795.352 kb on + strandat 795.353 kb on - strandat 795.451 kb on + strand, within ABIE41_RS03830at 795.451 kb on + strand, within ABIE41_RS03830at 795.452 kb on - strand, within ABIE41_RS03830at 795.583 kb on - strand, within ABIE41_RS03830at 795.583 kb on - strand, within ABIE41_RS03830at 795.583 kb on - strand, within ABIE41_RS03830at 795.583 kb on - strand, within ABIE41_RS03830at 795.583 kb on - strand, within ABIE41_RS03830at 795.703 kb on - strandat 795.802 kb on + strandat 795.802 kb on + strandat 795.803 kb on - strandat 795.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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793,239 + ABIE41_RS03810 0.72 -0.1
793,392 + -0.7
793,392 + -1.6
793,392 + -1.1
793,392 + -2.8
793,392 + -1.5
793,392 + -0.2
793,393 - -0.1
793,395 - -1.1
793,655 + ABIE41_RS03815 0.62 -0.7
793,655 + ABIE41_RS03815 0.62 +0.3
793,655 + ABIE41_RS03815 0.62 +0.9
793,656 - ABIE41_RS03815 0.62 -0.2
793,660 + ABIE41_RS03815 0.63 +0.3
793,660 + ABIE41_RS03815 0.63 +2.2
793,660 + ABIE41_RS03815 0.63 -1.0
793,660 + ABIE41_RS03815 0.63 -0.3
793,660 + ABIE41_RS03815 0.63 +0.8
793,660 + ABIE41_RS03815 0.63 -0.5
793,661 - ABIE41_RS03815 0.64 +2.1
793,676 + ABIE41_RS03815 0.68 -0.4
793,676 + ABIE41_RS03815 0.68 +3.1
793,676 + ABIE41_RS03815 0.68 -1.0
793,677 - ABIE41_RS03815 0.69 +2.0
793,677 - ABIE41_RS03815 0.69 +0.9
793,677 - ABIE41_RS03815 0.69 -0.2
793,788 + -1.0
794,803 + +0.2
794,803 + -3.0
794,803 + -0.2
794,804 - -0.1
794,804 - +0.2
795,204 + ABIE41_RS03825 0.78 -1.0
795,205 - ABIE41_RS03825 0.78 -0.8
795,205 - ABIE41_RS03825 0.78 -2.4
795,214 + ABIE41_RS03825 0.80 -0.0
795,214 + ABIE41_RS03825 0.80 -0.0
795,214 + ABIE41_RS03825 0.80 -0.2
795,215 - ABIE41_RS03825 0.80 -1.7
795,215 - ABIE41_RS03825 0.80 -1.1
795,215 - ABIE41_RS03825 0.80 +1.6
795,215 - ABIE41_RS03825 0.80 -1.3
795,265 + +1.6
795,352 + +0.2
795,353 - -0.5
795,451 + ABIE41_RS03830 0.19 +0.4
795,451 + ABIE41_RS03830 0.19 -0.2
795,452 - ABIE41_RS03830 0.19 -0.3
795,583 - ABIE41_RS03830 0.56 +0.2
795,583 - ABIE41_RS03830 0.56 +1.1
795,583 - ABIE41_RS03830 0.56 -0.5
795,583 - ABIE41_RS03830 0.56 -0.4
795,583 - ABIE41_RS03830 0.56 +0.8
795,703 - -1.7
795,802 + -0.3
795,802 + +0.8
795,803 - -0.5
795,803 - -1.6

Or see this region's nucleotide sequence