Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03800 and ABIE41_RS03805 are separated by 263 nucleotides ABIE41_RS03805 and ABIE41_RS03810 are separated by 58 nucleotides ABIE41_RS03810 and ABIE41_RS03815 are separated by 4 nucleotides
ABIE41_RS03800: ABIE41_RS03800 - carbonic anhydrase, at 790,860 to 791,585
_RS03800
ABIE41_RS03805: ABIE41_RS03805 - hypothetical protein, at 791,849 to 792,634
_RS03805
ABIE41_RS03810: ABIE41_RS03810 - imidazole glycerol phosphate synthase subunit HisF, at 792,693 to 793,454
_RS03810
ABIE41_RS03815: ABIE41_RS03815 - phosphoribosyl-ATP diphosphatase, at 793,459 to 793,776
_RS03815
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 790.895 kb on - strand at 791.163 kb on + strand, within ABIE41_RS03800 at 791.163 kb on + strand, within ABIE41_RS03800 at 791.163 kb on + strand, within ABIE41_RS03800 at 791.659 kb on + strand at 791.768 kb on - strand at 792.053 kb on + strand, within ABIE41_RS03805 at 792.053 kb on + strand, within ABIE41_RS03805 at 792.054 kb on - strand, within ABIE41_RS03805 at 792.656 kb on + strand at 792.657 kb on - strand at 792.657 kb on - strand at 792.657 kb on - strand at 792.807 kb on + strand, within ABIE41_RS03810 at 792.808 kb on - strand, within ABIE41_RS03810 at 793.239 kb on + strand, within ABIE41_RS03810 at 793.392 kb on + strand at 793.392 kb on + strand at 793.392 kb on + strand at 793.392 kb on + strand at 793.392 kb on + strand at 793.392 kb on + strand at 793.393 kb on - strand at 793.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 790,895 - -1.2 791,163 + ABIE41_RS03800 0.42 +0.1 791,163 + ABIE41_RS03800 0.42 +0.5 791,163 + ABIE41_RS03800 0.42 +0.4 791,659 + -0.3 791,768 - -0.3 792,053 + ABIE41_RS03805 0.26 -1.7 792,053 + ABIE41_RS03805 0.26 -1.5 792,054 - ABIE41_RS03805 0.26 -1.2 792,656 + -0.6 792,657 - +0.4 792,657 - +0.4 792,657 - +0.9 792,807 + ABIE41_RS03810 0.15 -0.6 792,808 - ABIE41_RS03810 0.15 +3.4 793,239 + ABIE41_RS03810 0.72 -0.1 793,392 + -0.7 793,392 + -1.6 793,392 + -1.1 793,392 + -2.8 793,392 + -1.5 793,392 + -0.2 793,393 - -0.1 793,395 - -1.1
Or see this region's nucleotide sequence