Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02375

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02370 and ABIE41_RS02375 overlap by 4 nucleotidesABIE41_RS02375 and ABIE41_RS02380 are separated by 138 nucleotides ABIE41_RS02370: ABIE41_RS02370 - ABC transporter ATP-binding protein, at 471,838 to 472,929 _RS02370 ABIE41_RS02375: ABIE41_RS02375 - extracellular solute-binding protein, at 472,926 to 473,969 _RS02375 ABIE41_RS02380: ABIE41_RS02380 - DeoR/GlpR family DNA-binding transcription regulator, at 474,108 to 474,923 _RS02380 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.978 kb on - strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.494 kb on - strand, within ABIE41_RS02370at 472.589 kb on + strand, within ABIE41_RS02370at 472.590 kb on - strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.090 kb on - strand, within ABIE41_RS02375at 473.090 kb on - strand, within ABIE41_RS02375at 473.092 kb on + strand, within ABIE41_RS02375at 473.092 kb on + strand, within ABIE41_RS02375at 473.093 kb on - strand, within ABIE41_RS02375at 473.166 kb on - strand, within ABIE41_RS02375at 473.237 kb on - strand, within ABIE41_RS02375at 473.488 kb on + strand, within ABIE41_RS02375at 473.488 kb on + strand, within ABIE41_RS02375at 473.489 kb on - strand, within ABIE41_RS02375at 473.489 kb on - strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.593 kb on + strand, within ABIE41_RS02375at 473.600 kb on - strand, within ABIE41_RS02375at 473.600 kb on - strand, within ABIE41_RS02375at 473.720 kb on - strand, within ABIE41_RS02375

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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471,977 + ABIE41_RS02370 0.13 +0.5
471,977 + ABIE41_RS02370 0.13 +0.1
471,977 + ABIE41_RS02370 0.13 +1.2
471,977 + ABIE41_RS02370 0.13 -1.0
471,977 + ABIE41_RS02370 0.13 -0.0
471,978 - ABIE41_RS02370 0.13 +0.2
472,196 + ABIE41_RS02370 0.33 +1.3
472,196 + ABIE41_RS02370 0.33 +0.1
472,196 + ABIE41_RS02370 0.33 -0.4
472,196 + ABIE41_RS02370 0.33 -1.1
472,196 + ABIE41_RS02370 0.33 -2.2
472,196 + ABIE41_RS02370 0.33 +0.5
472,196 + ABIE41_RS02370 0.33 -1.5
472,196 + ABIE41_RS02370 0.33 +0.7
472,196 + ABIE41_RS02370 0.33 +0.6
472,197 - ABIE41_RS02370 0.33 -0.3
472,197 - ABIE41_RS02370 0.33 -0.9
472,197 - ABIE41_RS02370 0.33 -0.3
472,197 - ABIE41_RS02370 0.33 -0.7
472,197 - ABIE41_RS02370 0.33 -1.7
472,197 - ABIE41_RS02370 0.33 -0.1
472,197 - ABIE41_RS02370 0.33 -0.8
472,197 - ABIE41_RS02370 0.33 +0.4
472,494 - ABIE41_RS02370 0.60 -1.6
472,589 + ABIE41_RS02370 0.69 -1.4
472,590 - ABIE41_RS02370 0.69 -2.3
472,631 + ABIE41_RS02370 0.73 -2.0
472,631 + ABIE41_RS02370 0.73 -0.7
472,631 + ABIE41_RS02370 0.73 -0.4
472,631 + ABIE41_RS02370 0.73 -2.3
472,632 - ABIE41_RS02370 0.73 -2.3
472,632 - ABIE41_RS02370 0.73 -0.8
472,632 - ABIE41_RS02370 0.73 +0.5
472,632 - ABIE41_RS02370 0.73 +0.7
472,632 - ABIE41_RS02370 0.73 +0.8
473,089 + ABIE41_RS02375 0.16 -0.8
473,089 + ABIE41_RS02375 0.16 -1.7
473,089 + ABIE41_RS02375 0.16 -1.2
473,089 + ABIE41_RS02375 0.16 -0.3
473,089 + ABIE41_RS02375 0.16 -0.8
473,089 + ABIE41_RS02375 0.16 -0.0
473,090 - ABIE41_RS02375 0.16 -1.2
473,090 - ABIE41_RS02375 0.16 -1.2
473,092 + ABIE41_RS02375 0.16 -0.3
473,092 + ABIE41_RS02375 0.16 -0.1
473,093 - ABIE41_RS02375 0.16 +0.0
473,166 - ABIE41_RS02375 0.23 -0.9
473,237 - ABIE41_RS02375 0.30 -0.2
473,488 + ABIE41_RS02375 0.54 +0.9
473,488 + ABIE41_RS02375 0.54 -1.2
473,489 - ABIE41_RS02375 0.54 -1.2
473,489 - ABIE41_RS02375 0.54 +1.7
473,569 + ABIE41_RS02375 0.62 -0.9
473,569 + ABIE41_RS02375 0.62 -0.3
473,569 + ABIE41_RS02375 0.62 -0.1
473,569 + ABIE41_RS02375 0.62 -0.1
473,569 + ABIE41_RS02375 0.62 -2.2
473,570 - ABIE41_RS02375 0.62 +1.0
473,570 - ABIE41_RS02375 0.62 -0.7
473,570 - ABIE41_RS02375 0.62 -2.6
473,593 + ABIE41_RS02375 0.64 +0.4
473,600 - ABIE41_RS02375 0.65 +0.8
473,600 - ABIE41_RS02375 0.65 -1.0
473,720 - ABIE41_RS02375 0.76 +2.8

Or see this region's nucleotide sequence