Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01390

Experiment: R2A with 3-octanone 5.3129 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01385 and ABIE41_RS01390 are separated by 227 nucleotidesABIE41_RS01390 and ABIE41_RS01395 overlap by 4 nucleotides ABIE41_RS01385: ABIE41_RS01385 - alpha/beta hydrolase, at 273,835 to 274,926 _RS01385 ABIE41_RS01390: ABIE41_RS01390 - (2Fe-2S)-binding protein, at 275,154 to 275,672 _RS01390 ABIE41_RS01395: ABIE41_RS01395 - xanthine dehydrogenase family protein subunit M, at 275,669 to 276,694 _RS01395 Position (kb) 275 276Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.337 kb on + strand, within ABIE41_RS01385at 274.338 kb on - strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.373 kb on + strand, within ABIE41_RS01385at 274.374 kb on - strand, within ABIE41_RS01385at 274.490 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.666 kb on - strand, within ABIE41_RS01385at 274.941 kb on + strandat 274.941 kb on + strandat 274.942 kb on - strandat 275.484 kb on + strand, within ABIE41_RS01390at 275.484 kb on + strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.598 kb on + strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.678 kb on + strandat 275.678 kb on + strandat 275.678 kb on + strandat 275.679 kb on - strandat 275.684 kb on + strandat 275.685 kb on - strandat 275.685 kb on - strandat 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 276.029 kb on + strand, within ABIE41_RS01395at 276.029 kb on + strand, within ABIE41_RS01395at 276.029 kb on + strand, within ABIE41_RS01395at 276.030 kb on - strand, within ABIE41_RS01395at 276.030 kb on - strand, within ABIE41_RS01395at 276.033 kb on - strand, within ABIE41_RS01395at 276.033 kb on - strand, within ABIE41_RS01395at 276.033 kb on - strand, within ABIE41_RS01395at 276.033 kb on - strand, within ABIE41_RS01395at 276.038 kb on + strand, within ABIE41_RS01395at 276.038 kb on + strand, within ABIE41_RS01395at 276.038 kb on + strand, within ABIE41_RS01395at 276.245 kb on + strand, within ABIE41_RS01395at 276.341 kb on + strand, within ABIE41_RS01395at 276.341 kb on + strand, within ABIE41_RS01395at 276.341 kb on + strand, within ABIE41_RS01395at 276.342 kb on - strand, within ABIE41_RS01395at 276.342 kb on - strand, within ABIE41_RS01395at 276.342 kb on - strand, within ABIE41_RS01395at 276.342 kb on - strand, within ABIE41_RS01395at 276.342 kb on - strand, within ABIE41_RS01395at 276.359 kb on + strand, within ABIE41_RS01395at 276.359 kb on + strand, within ABIE41_RS01395at 276.359 kb on + strand, within ABIE41_RS01395at 276.360 kb on - strand, within ABIE41_RS01395at 276.360 kb on - strand, within ABIE41_RS01395at 276.360 kb on - strand, within ABIE41_RS01395at 276.360 kb on - strand, within ABIE41_RS01395at 276.386 kb on + strand, within ABIE41_RS01395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
remove
274,221 - ABIE41_RS01385 0.35 +0.3
274,221 - ABIE41_RS01385 0.35 +1.2
274,221 - ABIE41_RS01385 0.35 +1.5
274,337 + ABIE41_RS01385 0.46 -1.0
274,338 - ABIE41_RS01385 0.46 +1.6
274,367 + ABIE41_RS01385 0.49 +0.8
274,367 + ABIE41_RS01385 0.49 -0.5
274,367 + ABIE41_RS01385 0.49 +1.2
274,368 - ABIE41_RS01385 0.49 +0.1
274,368 - ABIE41_RS01385 0.49 -0.3
274,368 - ABIE41_RS01385 0.49 -0.1
274,368 - ABIE41_RS01385 0.49 -0.5
274,368 - ABIE41_RS01385 0.49 +0.1
274,371 + ABIE41_RS01385 0.49 +0.9
274,371 + ABIE41_RS01385 0.49 -0.3
274,371 + ABIE41_RS01385 0.49 -0.7
274,371 + ABIE41_RS01385 0.49 -1.7
274,371 + ABIE41_RS01385 0.49 +0.7
274,371 + ABIE41_RS01385 0.49 -3.2
274,371 + ABIE41_RS01385 0.49 +0.2
274,372 - ABIE41_RS01385 0.49 +0.3
274,372 - ABIE41_RS01385 0.49 -1.1
274,373 + ABIE41_RS01385 0.49 +1.0
274,374 - ABIE41_RS01385 0.49 -0.3
274,490 + ABIE41_RS01385 0.60 -0.2
274,580 + ABIE41_RS01385 0.68 +2.3
274,580 + ABIE41_RS01385 0.68 +0.2
274,580 + ABIE41_RS01385 0.68 -1.6
274,580 + ABIE41_RS01385 0.68 -0.7
274,580 + ABIE41_RS01385 0.68 +0.4
274,581 - ABIE41_RS01385 0.68 -1.0
274,581 - ABIE41_RS01385 0.68 -1.6
274,581 - ABIE41_RS01385 0.68 -0.5
274,581 - ABIE41_RS01385 0.68 -0.7
274,665 + ABIE41_RS01385 0.76 -0.3
274,665 + ABIE41_RS01385 0.76 -0.0
274,666 - ABIE41_RS01385 0.76 +0.3
274,941 + -2.5
274,941 + -0.2
274,942 - +0.3
275,484 + ABIE41_RS01390 0.64 +0.8
275,484 + ABIE41_RS01390 0.64 +0.6
275,485 - ABIE41_RS01390 0.64 -0.2
275,485 - ABIE41_RS01390 0.64 +0.2
275,485 - ABIE41_RS01390 0.64 +0.2
275,598 + ABIE41_RS01390 0.86 +1.6
275,599 - ABIE41_RS01390 0.86 +0.3
275,599 - ABIE41_RS01390 0.86 -0.9
275,599 - ABIE41_RS01390 0.86 -0.5
275,678 + +0.4
275,678 + -0.4
275,678 + +0.5
275,679 - +0.6
275,684 + -0.5
275,685 - +2.8
275,685 - +1.3
275,787 - ABIE41_RS01395 0.12 -0.8
275,787 - ABIE41_RS01395 0.12 -0.1
275,787 - ABIE41_RS01395 0.12 +0.3
275,787 - ABIE41_RS01395 0.12 -1.0
275,787 - ABIE41_RS01395 0.12 -0.4
275,787 - ABIE41_RS01395 0.12 -1.2
276,029 + ABIE41_RS01395 0.35 -1.3
276,029 + ABIE41_RS01395 0.35 -4.2
276,029 + ABIE41_RS01395 0.35 +1.3
276,030 - ABIE41_RS01395 0.35 +0.7
276,030 - ABIE41_RS01395 0.35 -0.4
276,033 - ABIE41_RS01395 0.35 +0.5
276,033 - ABIE41_RS01395 0.35 -0.1
276,033 - ABIE41_RS01395 0.35 +1.1
276,033 - ABIE41_RS01395 0.35 +0.3
276,038 + ABIE41_RS01395 0.36 +1.0
276,038 + ABIE41_RS01395 0.36 +1.3
276,038 + ABIE41_RS01395 0.36 +0.9
276,245 + ABIE41_RS01395 0.56 +0.7
276,341 + ABIE41_RS01395 0.65 -0.0
276,341 + ABIE41_RS01395 0.65 +0.2
276,341 + ABIE41_RS01395 0.65 +0.8
276,342 - ABIE41_RS01395 0.66 -0.5
276,342 - ABIE41_RS01395 0.66 -0.5
276,342 - ABIE41_RS01395 0.66 -2.2
276,342 - ABIE41_RS01395 0.66 +0.2
276,342 - ABIE41_RS01395 0.66 +1.5
276,359 + ABIE41_RS01395 0.67 +0.6
276,359 + ABIE41_RS01395 0.67 -1.6
276,359 + ABIE41_RS01395 0.67 -1.1
276,360 - ABIE41_RS01395 0.67 -0.4
276,360 - ABIE41_RS01395 0.67 -2.1
276,360 - ABIE41_RS01395 0.67 -1.5
276,360 - ABIE41_RS01395 0.67 -1.3
276,386 + ABIE41_RS01395 0.70 -1.8

Or see this region's nucleotide sequence