Experiment: Guanosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05131 and PFR28_05132 are separated by 303 nucleotides PFR28_05132 and PFR28_05133 are separated by 28 nucleotides PFR28_05133 and PFR28_05134 are separated by 36 nucleotides PFR28_05134 and PFR28_05135 are separated by 22 nucleotides
PFR28_05131: PFR28_05131 - '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11, at 5,878,237 to 5,878,998
_05131
PFR28_05132: PFR28_05132 - 30S ribosomal protein S6, at 5,879,302 to 5,879,721
_05132
PFR28_05133: PFR28_05133 - 30S ribosomal protein S18, at 5,879,750 to 5,879,980
_05133
PFR28_05134: PFR28_05134 - hypothetical protein, at 5,880,017 to 5,880,910
_05134
PFR28_05135: PFR28_05135 - 50S ribosomal protein L9, at 5,880,933 to 5,881,379
_05135
Position (kb) 5879
5880 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5878.789 kb on + strand, within PFR28_05131 at 5878.789 kb on + strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.790 kb on - strand, within PFR28_05131 at 5878.876 kb on + strand, within PFR28_05131 at 5878.877 kb on - strand, within PFR28_05131 at 5878.877 kb on - strand, within PFR28_05131 at 5878.877 kb on - strand, within PFR28_05131 at 5879.111 kb on + strand at 5879.112 kb on - strand at 5879.141 kb on - strand at 5879.212 kb on + strand at 5879.212 kb on + strand at 5879.212 kb on + strand at 5880.390 kb on + strand, within PFR28_05134 at 5880.779 kb on + strand, within PFR28_05134 at 5880.779 kb on + strand, within PFR28_05134 at 5880.779 kb on + strand, within PFR28_05134
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine (C) remove 5,878,789 + PFR28_05131 0.72 -0.6 5,878,789 + PFR28_05131 0.72 -0.7 5,878,790 - PFR28_05131 0.73 +0.8 5,878,790 - PFR28_05131 0.73 -1.3 5,878,790 - PFR28_05131 0.73 +2.6 5,878,790 - PFR28_05131 0.73 -1.7 5,878,790 - PFR28_05131 0.73 +2.4 5,878,790 - PFR28_05131 0.73 +1.5 5,878,876 + PFR28_05131 0.84 +2.7 5,878,877 - PFR28_05131 0.84 -2.0 5,878,877 - PFR28_05131 0.84 -0.4 5,878,877 - PFR28_05131 0.84 +2.9 5,879,111 + +2.8 5,879,112 - -0.7 5,879,141 - +2.2 5,879,212 + +1.1 5,879,212 + -1.2 5,879,212 + +1.5 5,880,390 + PFR28_05134 0.42 +0.6 5,880,779 + PFR28_05134 0.85 +3.0 5,880,779 + PFR28_05134 0.85 +3.4 5,880,779 + PFR28_05134 0.85 -0.9
Or see this region's nucleotide sequence