Strain Fitness in Pseudomonas sp. RS175 around PFR28_03811

Experiment: Guanosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03809 and PFR28_03810 are separated by 299 nucleotidesPFR28_03810 and PFR28_03811 are separated by 2 nucleotidesPFR28_03811 and PFR28_03812 are separated by 138 nucleotidesPFR28_03812 and PFR28_03813 are separated by 102 nucleotides PFR28_03809: PFR28_03809 - tRNA/tmRNA (uracil-C(5))-methyltransferase, at 4,383,431 to 4,384,510 _03809 PFR28_03810: PFR28_03810 - 3-dehydroquinate dehydratase 1, at 4,384,810 to 4,385,253 _03810 PFR28_03811: PFR28_03811 - Quinate/shikimate dehydrogenase (NAD(+)), at 4,385,256 to 4,386,107 _03811 PFR28_03812: PFR28_03812 - HTH-type transcriptional repressor NicS, at 4,386,246 to 4,386,923 _03812 PFR28_03813: PFR28_03813 - hypothetical protein, at 4,387,026 to 4,388,927 _03813 Position (kb) 4385 4386 4387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4384.281 kb on - strand, within PFR28_03809at 4384.281 kb on - strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.370 kb on + strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.371 kb on - strand, within PFR28_03809at 4384.477 kb on + strandat 4384.478 kb on - strandat 4384.478 kb on - strandat 4384.478 kb on - strandat 4384.508 kb on + strandat 4384.508 kb on + strandat 4384.508 kb on + strandat 4384.508 kb on + strandat 4384.508 kb on + strandat 4384.508 kb on + strandat 4384.509 kb on - strandat 4384.509 kb on - strandat 4384.633 kb on + strandat 4384.633 kb on + strandat 4384.634 kb on - strandat 4384.700 kb on + strandat 4384.700 kb on + strandat 4384.700 kb on + strandat 4384.700 kb on + strandat 4384.700 kb on + strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.701 kb on - strandat 4384.744 kb on - strandat 4384.746 kb on + strandat 4384.789 kb on + strandat 4384.789 kb on + strandat 4384.789 kb on + strandat 4384.879 kb on + strand, within PFR28_03810at 4384.879 kb on + strand, within PFR28_03810at 4384.879 kb on + strand, within PFR28_03810at 4384.879 kb on + strand, within PFR28_03810at 4384.880 kb on - strand, within PFR28_03810at 4384.880 kb on - strand, within PFR28_03810at 4384.880 kb on - strand, within PFR28_03810at 4384.880 kb on - strand, within PFR28_03810at 4384.902 kb on + strand, within PFR28_03810at 4384.903 kb on - strand, within PFR28_03810at 4385.358 kb on + strand, within PFR28_03811at 4385.364 kb on + strand, within PFR28_03811at 4385.540 kb on + strand, within PFR28_03811at 4385.540 kb on + strand, within PFR28_03811at 4385.540 kb on + strand, within PFR28_03811at 4385.540 kb on + strand, within PFR28_03811at 4385.647 kb on + strand, within PFR28_03811at 4385.648 kb on - strand, within PFR28_03811at 4385.707 kb on + strand, within PFR28_03811at 4385.707 kb on + strand, within PFR28_03811at 4385.849 kb on + strand, within PFR28_03811at 4385.849 kb on + strand, within PFR28_03811at 4385.849 kb on + strand, within PFR28_03811at 4385.937 kb on + strand, within PFR28_03811at 4385.937 kb on + strand, within PFR28_03811at 4385.938 kb on - strand, within PFR28_03811at 4386.106 kb on - strandat 4386.118 kb on + strandat 4386.119 kb on - strandat 4386.119 kb on - strandat 4386.119 kb on - strandat 4386.119 kb on - strandat 4386.119 kb on - strandat 4386.135 kb on + strandat 4386.135 kb on + strandat 4386.135 kb on + strandat 4386.135 kb on + strandat 4386.135 kb on + strandat 4386.136 kb on - strandat 4386.189 kb on - strandat 4386.189 kb on - strandat 4386.189 kb on - strandat 4386.189 kb on - strandat 4386.189 kb on - strandat 4386.367 kb on + strand, within PFR28_03812at 4386.517 kb on + strand, within PFR28_03812at 4386.517 kb on + strand, within PFR28_03812at 4386.518 kb on - strand, within PFR28_03812at 4386.518 kb on - strand, within PFR28_03812at 4386.657 kb on - strand, within PFR28_03812at 4386.660 kb on - strand, within PFR28_03812at 4386.660 kb on - strand, within PFR28_03812at 4386.660 kb on - strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.697 kb on + strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.698 kb on - strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.721 kb on + strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.722 kb on - strand, within PFR28_03812at 4386.724 kb on + strand, within PFR28_03812at 4386.724 kb on + strand, within PFR28_03812at 4386.724 kb on + strand, within PFR28_03812at 4386.725 kb on - strand, within PFR28_03812at 4386.725 kb on - strand, within PFR28_03812at 4386.725 kb on - strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.727 kb on + strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.728 kb on - strand, within PFR28_03812at 4386.917 kb on + strandat 4386.917 kb on + strandat 4386.918 kb on - strandat 4386.918 kb on - strandat 4386.961 kb on - strandat 4387.023 kb on + strandat 4387.023 kb on + strandat 4387.023 kb on + strandat 4387.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine (C)
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4,384,281 - PFR28_03809 0.79 -2.1
4,384,281 - PFR28_03809 0.79 +2.4
4,384,370 + PFR28_03809 0.87 -3.8
4,384,370 + PFR28_03809 0.87 -2.1
4,384,370 + PFR28_03809 0.87 -2.9
4,384,370 + PFR28_03809 0.87 -0.2
4,384,370 + PFR28_03809 0.87 +0.4
4,384,370 + PFR28_03809 0.87 +0.3
4,384,370 + PFR28_03809 0.87 -1.7
4,384,370 + PFR28_03809 0.87 -0.1
4,384,370 + PFR28_03809 0.87 -0.1
4,384,370 + PFR28_03809 0.87 -0.5
4,384,371 - PFR28_03809 0.87 +0.3
4,384,371 - PFR28_03809 0.87 -1.4
4,384,371 - PFR28_03809 0.87 +1.9
4,384,371 - PFR28_03809 0.87 +0.8
4,384,371 - PFR28_03809 0.87 +1.0
4,384,371 - PFR28_03809 0.87 -0.2
4,384,371 - PFR28_03809 0.87 +1.0
4,384,371 - PFR28_03809 0.87 +0.3
4,384,371 - PFR28_03809 0.87 -1.3
4,384,371 - PFR28_03809 0.87 +2.0
4,384,477 + +1.4
4,384,478 - +0.2
4,384,478 - -1.9
4,384,478 - -2.6
4,384,508 + -0.1
4,384,508 + -2.6
4,384,508 + +0.9
4,384,508 + +0.3
4,384,508 + +0.5
4,384,508 + +3.6
4,384,509 - +1.0
4,384,509 - -1.7
4,384,633 + -2.9
4,384,633 + +1.0
4,384,634 - -2.4
4,384,700 + -2.8
4,384,700 + -2.2
4,384,700 + -3.5
4,384,700 + -0.2
4,384,700 + -1.0
4,384,701 - +0.4
4,384,701 - -1.4
4,384,701 - -1.5
4,384,701 - -1.8
4,384,701 - -2.7
4,384,701 - +2.1
4,384,701 - +2.7
4,384,744 - +3.2
4,384,746 + -1.6
4,384,789 + -3.2
4,384,789 + +0.4
4,384,789 + -0.2
4,384,879 + PFR28_03810 0.16 +0.5
4,384,879 + PFR28_03810 0.16 +1.4
4,384,879 + PFR28_03810 0.16 +1.7
4,384,879 + PFR28_03810 0.16 +0.4
4,384,880 - PFR28_03810 0.16 +1.3
4,384,880 - PFR28_03810 0.16 +2.1
4,384,880 - PFR28_03810 0.16 +2.0
4,384,880 - PFR28_03810 0.16 +1.3
4,384,902 + PFR28_03810 0.21 -2.2
4,384,903 - PFR28_03810 0.21 +2.1
4,385,358 + PFR28_03811 0.12 -2.4
4,385,364 + PFR28_03811 0.13 -2.6
4,385,540 + PFR28_03811 0.33 -2.6
4,385,540 + PFR28_03811 0.33 -4.2
4,385,540 + PFR28_03811 0.33 -0.5
4,385,540 + PFR28_03811 0.33 +0.3
4,385,647 + PFR28_03811 0.46 +0.2
4,385,648 - PFR28_03811 0.46 +0.4
4,385,707 + PFR28_03811 0.53 +0.7
4,385,707 + PFR28_03811 0.53 +0.7
4,385,849 + PFR28_03811 0.70 +1.7
4,385,849 + PFR28_03811 0.70 +0.2
4,385,849 + PFR28_03811 0.70 +1.3
4,385,937 + PFR28_03811 0.80 -2.0
4,385,937 + PFR28_03811 0.80 +0.4
4,385,938 - PFR28_03811 0.80 -0.1
4,386,106 - +1.4
4,386,118 + +2.0
4,386,119 - -2.9
4,386,119 - -1.8
4,386,119 - -0.9
4,386,119 - +1.2
4,386,119 - +0.9
4,386,135 + +1.6
4,386,135 + +3.5
4,386,135 + +0.7
4,386,135 + -3.3
4,386,135 + +3.1
4,386,136 - -2.8
4,386,189 - -1.1
4,386,189 - +2.8
4,386,189 - +0.1
4,386,189 - +0.1
4,386,189 - +1.1
4,386,367 + PFR28_03812 0.18 +0.2
4,386,517 + PFR28_03812 0.40 -0.8
4,386,517 + PFR28_03812 0.40 +0.9
4,386,518 - PFR28_03812 0.40 +0.5
4,386,518 - PFR28_03812 0.40 +1.0
4,386,657 - PFR28_03812 0.61 -1.7
4,386,660 - PFR28_03812 0.61 -1.7
4,386,660 - PFR28_03812 0.61 +3.0
4,386,660 - PFR28_03812 0.61 -1.7
4,386,697 + PFR28_03812 0.67 -2.0
4,386,697 + PFR28_03812 0.67 +1.8
4,386,697 + PFR28_03812 0.67 -0.0
4,386,697 + PFR28_03812 0.67 -0.9
4,386,697 + PFR28_03812 0.67 +0.8
4,386,697 + PFR28_03812 0.67 +2.1
4,386,697 + PFR28_03812 0.67 -0.5
4,386,697 + PFR28_03812 0.67 +0.1
4,386,697 + PFR28_03812 0.67 -0.4
4,386,697 + PFR28_03812 0.67 +1.2
4,386,697 + PFR28_03812 0.67 +1.3
4,386,697 + PFR28_03812 0.67 +1.5
4,386,697 + PFR28_03812 0.67 +3.3
4,386,697 + PFR28_03812 0.67 +0.9
4,386,697 + PFR28_03812 0.67 +0.9
4,386,697 + PFR28_03812 0.67 -2.3
4,386,697 + PFR28_03812 0.67 -0.1
4,386,697 + PFR28_03812 0.67 +1.1
4,386,697 + PFR28_03812 0.67 +0.5
4,386,698 - PFR28_03812 0.67 -1.8
4,386,698 - PFR28_03812 0.67 +1.8
4,386,698 - PFR28_03812 0.67 +0.6
4,386,698 - PFR28_03812 0.67 -0.4
4,386,698 - PFR28_03812 0.67 -1.3
4,386,698 - PFR28_03812 0.67 -1.7
4,386,698 - PFR28_03812 0.67 -1.5
4,386,698 - PFR28_03812 0.67 -2.5
4,386,698 - PFR28_03812 0.67 +0.6
4,386,698 - PFR28_03812 0.67 -0.8
4,386,698 - PFR28_03812 0.67 -2.2
4,386,698 - PFR28_03812 0.67 +1.7
4,386,698 - PFR28_03812 0.67 +1.8
4,386,698 - PFR28_03812 0.67 +1.4
4,386,698 - PFR28_03812 0.67 -2.8
4,386,698 - PFR28_03812 0.67 +2.2
4,386,698 - PFR28_03812 0.67 +2.1
4,386,721 + PFR28_03812 0.70 +1.5
4,386,721 + PFR28_03812 0.70 -2.5
4,386,721 + PFR28_03812 0.70 -0.4
4,386,721 + PFR28_03812 0.70 +1.1
4,386,721 + PFR28_03812 0.70 +4.0
4,386,721 + PFR28_03812 0.70 +2.0
4,386,722 - PFR28_03812 0.70 +0.4
4,386,722 - PFR28_03812 0.70 +2.1
4,386,722 - PFR28_03812 0.70 -0.8
4,386,722 - PFR28_03812 0.70 +0.6
4,386,722 - PFR28_03812 0.70 +1.2
4,386,722 - PFR28_03812 0.70 -1.8
4,386,724 + PFR28_03812 0.71 +0.6
4,386,724 + PFR28_03812 0.71 +0.6
4,386,724 + PFR28_03812 0.71 +0.1
4,386,725 - PFR28_03812 0.71 -0.5
4,386,725 - PFR28_03812 0.71 +0.5
4,386,725 - PFR28_03812 0.71 -0.9
4,386,727 + PFR28_03812 0.71 +2.8
4,386,727 + PFR28_03812 0.71 -0.5
4,386,727 + PFR28_03812 0.71 -0.2
4,386,727 + PFR28_03812 0.71 +0.6
4,386,727 + PFR28_03812 0.71 +0.6
4,386,727 + PFR28_03812 0.71 +0.3
4,386,727 + PFR28_03812 0.71 -0.9
4,386,727 + PFR28_03812 0.71 +3.1
4,386,727 + PFR28_03812 0.71 +0.4
4,386,727 + PFR28_03812 0.71 +1.0
4,386,727 + PFR28_03812 0.71 +0.3
4,386,727 + PFR28_03812 0.71 +1.5
4,386,727 + PFR28_03812 0.71 -1.8
4,386,728 - PFR28_03812 0.71 +3.2
4,386,728 - PFR28_03812 0.71 -2.5
4,386,728 - PFR28_03812 0.71 +1.7
4,386,728 - PFR28_03812 0.71 -0.9
4,386,728 - PFR28_03812 0.71 -1.1
4,386,728 - PFR28_03812 0.71 +2.0
4,386,728 - PFR28_03812 0.71 +2.0
4,386,728 - PFR28_03812 0.71 +1.2
4,386,728 - PFR28_03812 0.71 +1.6
4,386,728 - PFR28_03812 0.71 -2.2
4,386,917 + +0.1
4,386,917 + +0.4
4,386,918 - +1.4
4,386,918 - +1.0
4,386,961 - +0.2
4,387,023 + +1.2
4,387,023 + +0.9
4,387,023 + +4.0
4,387,024 - +1.9

Or see this region's nucleotide sequence