Experiment: Guanosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00346 and PFR28_00347 are separated by 133 nucleotides PFR28_00347 and PFR28_00348 are separated by 90 nucleotides
PFR28_00346: PFR28_00346 - Spermidine/putrescine import ATP-binding protein PotA, at 377,967 to 379,004
_00346
PFR28_00347: PFR28_00347 - Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein, at 379,138 to 380,289
_00347
PFR28_00348: PFR28_00348 - Gamma-aminobutyraldehyde dehydrogenase, at 380,380 to 381,837
_00348
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 378.149 kb on - strand, within PFR28_00346 at 378.337 kb on + strand, within PFR28_00346 at 378.338 kb on - strand, within PFR28_00346 at 378.338 kb on - strand, within PFR28_00346 at 378.338 kb on - strand, within PFR28_00346 at 378.710 kb on - strand, within PFR28_00346 at 378.710 kb on - strand, within PFR28_00346 at 378.734 kb on + strand, within PFR28_00346 at 378.734 kb on + strand, within PFR28_00346 at 378.734 kb on + strand, within PFR28_00346 at 378.734 kb on + strand, within PFR28_00346 at 378.752 kb on - strand, within PFR28_00346 at 378.976 kb on - strand at 378.976 kb on - strand at 379.033 kb on + strand at 379.033 kb on + strand at 379.033 kb on + strand at 379.033 kb on + strand at 379.033 kb on + strand at 379.034 kb on - strand at 379.034 kb on - strand at 379.139 kb on + strand at 379.140 kb on - strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.163 kb on + strand at 379.164 kb on - strand at 379.164 kb on - strand at 379.164 kb on - strand at 379.164 kb on - strand at 379.164 kb on - strand at 379.164 kb on - strand at 379.184 kb on + strand at 379.184 kb on + strand at 379.185 kb on - strand at 379.185 kb on - strand at 379.185 kb on - strand at 379.193 kb on + strand at 379.193 kb on + strand at 379.193 kb on + strand at 379.194 kb on - strand at 379.194 kb on - strand at 379.385 kb on + strand, within PFR28_00347 at 379.385 kb on + strand, within PFR28_00347 at 379.385 kb on + strand, within PFR28_00347 at 379.386 kb on - strand, within PFR28_00347 at 379.386 kb on - strand, within PFR28_00347 at 379.386 kb on - strand, within PFR28_00347 at 379.386 kb on - strand, within PFR28_00347 at 379.386 kb on - strand, within PFR28_00347 at 379.508 kb on + strand, within PFR28_00347 at 379.508 kb on + strand, within PFR28_00347 at 379.631 kb on + strand, within PFR28_00347 at 379.631 kb on + strand, within PFR28_00347 at 379.631 kb on + strand, within PFR28_00347 at 379.631 kb on + strand, within PFR28_00347 at 379.632 kb on - strand, within PFR28_00347 at 379.632 kb on - strand, within PFR28_00347 at 379.632 kb on - strand, within PFR28_00347 at 379.695 kb on - strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.715 kb on + strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.716 kb on - strand, within PFR28_00347 at 379.730 kb on + strand, within PFR28_00347 at 379.730 kb on + strand, within PFR28_00347 at 379.730 kb on + strand, within PFR28_00347 at 379.730 kb on + strand, within PFR28_00347 at 379.730 kb on + strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.731 kb on - strand, within PFR28_00347 at 379.738 kb on + strand, within PFR28_00347 at 379.739 kb on - strand, within PFR28_00347 at 379.739 kb on - strand, within PFR28_00347 at 379.832 kb on + strand, within PFR28_00347 at 379.832 kb on + strand, within PFR28_00347 at 379.832 kb on + strand, within PFR28_00347 at 379.832 kb on + strand, within PFR28_00347 at 379.833 kb on - strand, within PFR28_00347 at 379.833 kb on - strand, within PFR28_00347 at 379.833 kb on - strand, within PFR28_00347 at 379.833 kb on - strand, within PFR28_00347 at 379.871 kb on + strand, within PFR28_00347 at 379.871 kb on + strand, within PFR28_00347 at 379.871 kb on + strand, within PFR28_00347 at 379.872 kb on - strand, within PFR28_00347 at 379.892 kb on + strand, within PFR28_00347 at 379.893 kb on - strand, within PFR28_00347 at 379.893 kb on - strand, within PFR28_00347 at 379.893 kb on - strand, within PFR28_00347 at 380.123 kb on + strand, within PFR28_00347 at 380.124 kb on - strand, within PFR28_00347 at 380.124 kb on - strand, within PFR28_00347 at 380.153 kb on + strand, within PFR28_00347 at 380.153 kb on + strand, within PFR28_00347 at 380.153 kb on + strand, within PFR28_00347 at 380.153 kb on + strand, within PFR28_00347 at 380.285 kb on + strand at 380.286 kb on - strand at 380.286 kb on - strand at 380.307 kb on + strand at 380.307 kb on + strand at 380.307 kb on + strand at 380.307 kb on + strand at 380.307 kb on + strand at 380.308 kb on - strand at 380.308 kb on - strand at 380.308 kb on - strand at 380.308 kb on - strand at 380.312 kb on - strand at 380.312 kb on - strand at 380.360 kb on + strand at 380.360 kb on + strand at 380.360 kb on + strand at 380.360 kb on + strand at 380.361 kb on - strand at 380.363 kb on + strand at 380.363 kb on + strand at 380.363 kb on + strand at 380.363 kb on + strand at 380.364 kb on - strand at 380.364 kb on - strand at 380.364 kb on - strand at 380.368 kb on + strand at 380.368 kb on + strand at 380.368 kb on + strand at 380.368 kb on + strand at 380.369 kb on - strand at 380.369 kb on - strand at 380.377 kb on + strand at 380.377 kb on + strand at 380.378 kb on - strand at 380.378 kb on - strand at 380.378 kb on - strand at 380.378 kb on - strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.381 kb on + strand at 380.382 kb on - strand at 380.382 kb on - strand at 380.382 kb on - strand at 380.426 kb on + strand at 380.426 kb on + strand at 380.426 kb on + strand at 380.427 kb on - strand at 380.538 kb on - strand, within PFR28_00348 at 380.738 kb on + strand, within PFR28_00348 at 380.738 kb on + strand, within PFR28_00348 at 380.739 kb on - strand, within PFR28_00348 at 380.739 kb on - strand, within PFR28_00348 at 380.957 kb on + strand, within PFR28_00348 at 380.958 kb on - strand, within PFR28_00348 at 380.958 kb on - strand, within PFR28_00348 at 380.996 kb on + strand, within PFR28_00348 at 380.996 kb on + strand, within PFR28_00348 at 380.996 kb on + strand, within PFR28_00348 at 380.996 kb on + strand, within PFR28_00348 at 380.996 kb on + strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.997 kb on - strand, within PFR28_00348 at 380.999 kb on + strand, within PFR28_00348 at 381.000 kb on - strand, within PFR28_00348 at 381.005 kb on + strand, within PFR28_00348 at 381.005 kb on + strand, within PFR28_00348 at 381.005 kb on + strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.006 kb on - strand, within PFR28_00348 at 381.052 kb on + strand, within PFR28_00348 at 381.053 kb on - strand, within PFR28_00348 at 381.053 kb on - strand, within PFR28_00348 at 381.090 kb on + strand, within PFR28_00348 at 381.091 kb on - strand, within PFR28_00348 at 381.091 kb on - strand, within PFR28_00348 at 381.257 kb on - strand, within PFR28_00348
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine (C) remove 378,149 - PFR28_00346 0.18 -3.7 378,337 + PFR28_00346 0.36 +1.9 378,338 - PFR28_00346 0.36 -1.0 378,338 - PFR28_00346 0.36 -0.0 378,338 - PFR28_00346 0.36 +1.9 378,710 - PFR28_00346 0.72 +2.9 378,710 - PFR28_00346 0.72 -0.4 378,734 + PFR28_00346 0.74 +3.1 378,734 + PFR28_00346 0.74 -0.7 378,734 + PFR28_00346 0.74 +2.1 378,734 + PFR28_00346 0.74 +0.0 378,752 - PFR28_00346 0.76 -0.1 378,976 - +0.5 378,976 - -1.5 379,033 + -0.6 379,033 + -1.8 379,033 + +0.0 379,033 + +2.0 379,033 + +1.3 379,034 - -2.3 379,034 - +1.8 379,139 + +2.6 379,140 - -0.1 379,163 + +1.3 379,163 + -2.9 379,163 + +1.8 379,163 + -1.6 379,163 + -0.0 379,163 + +0.0 379,163 + +0.7 379,163 + +3.6 379,164 - +0.9 379,164 - -1.1 379,164 - +1.5 379,164 - -1.4 379,164 - -0.2 379,164 - -0.6 379,184 + -2.3 379,184 + -1.3 379,185 - -1.4 379,185 - -0.6 379,185 - +0.1 379,193 + -0.2 379,193 + -0.1 379,193 + +1.2 379,194 - -2.8 379,194 - -0.6 379,385 + PFR28_00347 0.21 -1.9 379,385 + PFR28_00347 0.21 -1.7 379,385 + PFR28_00347 0.21 -2.5 379,386 - PFR28_00347 0.22 +1.4 379,386 - PFR28_00347 0.22 -0.9 379,386 - PFR28_00347 0.22 +0.3 379,386 - PFR28_00347 0.22 -0.2 379,386 - PFR28_00347 0.22 +0.9 379,508 + PFR28_00347 0.32 -0.4 379,508 + PFR28_00347 0.32 +0.8 379,631 + PFR28_00347 0.43 +0.2 379,631 + PFR28_00347 0.43 +1.1 379,631 + PFR28_00347 0.43 +1.5 379,631 + PFR28_00347 0.43 -0.3 379,632 - PFR28_00347 0.43 +0.7 379,632 - PFR28_00347 0.43 -2.5 379,632 - PFR28_00347 0.43 -1.7 379,695 - PFR28_00347 0.48 -1.0 379,715 + PFR28_00347 0.50 -3.8 379,715 + PFR28_00347 0.50 -1.6 379,715 + PFR28_00347 0.50 +1.3 379,715 + PFR28_00347 0.50 +0.9 379,715 + PFR28_00347 0.50 +2.0 379,715 + PFR28_00347 0.50 -1.7 379,715 + PFR28_00347 0.50 -1.7 379,716 - PFR28_00347 0.50 -1.8 379,716 - PFR28_00347 0.50 -0.5 379,716 - PFR28_00347 0.50 -3.1 379,716 - PFR28_00347 0.50 +1.6 379,716 - PFR28_00347 0.50 -1.6 379,716 - PFR28_00347 0.50 -0.4 379,716 - PFR28_00347 0.50 +1.2 379,730 + PFR28_00347 0.51 +0.3 379,730 + PFR28_00347 0.51 +1.2 379,730 + PFR28_00347 0.51 +1.1 379,730 + PFR28_00347 0.51 +0.6 379,730 + PFR28_00347 0.51 -2.7 379,731 - PFR28_00347 0.51 +1.1 379,731 - PFR28_00347 0.51 +0.8 379,731 - PFR28_00347 0.51 -1.4 379,731 - PFR28_00347 0.51 -1.6 379,731 - PFR28_00347 0.51 +3.1 379,731 - PFR28_00347 0.51 -2.1 379,731 - PFR28_00347 0.51 +2.2 379,738 + PFR28_00347 0.52 +1.1 379,739 - PFR28_00347 0.52 +2.2 379,739 - PFR28_00347 0.52 -0.4 379,832 + PFR28_00347 0.60 -1.6 379,832 + PFR28_00347 0.60 +3.1 379,832 + PFR28_00347 0.60 -1.1 379,832 + PFR28_00347 0.60 +2.5 379,833 - PFR28_00347 0.60 -2.9 379,833 - PFR28_00347 0.60 -0.2 379,833 - PFR28_00347 0.60 -2.7 379,833 - PFR28_00347 0.60 -2.8 379,871 + PFR28_00347 0.64 +0.9 379,871 + PFR28_00347 0.64 -1.4 379,871 + PFR28_00347 0.64 -1.1 379,872 - PFR28_00347 0.64 +1.0 379,892 + PFR28_00347 0.65 +0.5 379,893 - PFR28_00347 0.66 -2.1 379,893 - PFR28_00347 0.66 -3.1 379,893 - PFR28_00347 0.66 +0.6 380,123 + PFR28_00347 0.86 +0.9 380,124 - PFR28_00347 0.86 -1.8 380,124 - PFR28_00347 0.86 +0.9 380,153 + PFR28_00347 0.88 +0.4 380,153 + PFR28_00347 0.88 -0.2 380,153 + PFR28_00347 0.88 +0.0 380,153 + PFR28_00347 0.88 +1.1 380,285 + -2.5 380,286 - -0.7 380,286 - +2.0 380,307 + +2.3 380,307 + +0.1 380,307 + -0.1 380,307 + -0.8 380,307 + -1.7 380,308 - -1.5 380,308 - -0.4 380,308 - +0.2 380,308 - -0.3 380,312 - +0.3 380,312 - -2.2 380,360 + +0.1 380,360 + -2.0 380,360 + +1.6 380,360 + +0.5 380,361 - +0.8 380,363 + +1.0 380,363 + +0.3 380,363 + -1.8 380,363 + +4.0 380,364 - -0.0 380,364 - -0.7 380,364 - +0.2 380,368 + +0.4 380,368 + +1.8 380,368 + +0.7 380,368 + -1.4 380,369 - +0.4 380,369 - -0.5 380,377 + +0.2 380,377 + -3.1 380,378 - -2.2 380,378 - -1.9 380,378 - -1.0 380,378 - +0.1 380,381 + -1.9 380,381 + -1.0 380,381 + +0.4 380,381 + -1.1 380,381 + -0.5 380,381 + -0.7 380,381 + +1.0 380,381 + +0.7 380,382 - -0.8 380,382 - -0.3 380,382 - -1.4 380,426 + -3.3 380,426 + -1.0 380,426 + -3.7 380,427 - +1.5 380,538 - PFR28_00348 0.11 -1.2 380,738 + PFR28_00348 0.25 -2.5 380,738 + PFR28_00348 0.25 -0.5 380,739 - PFR28_00348 0.25 -0.0 380,739 - PFR28_00348 0.25 -1.6 380,957 + PFR28_00348 0.40 +3.2 380,958 - PFR28_00348 0.40 -1.3 380,958 - PFR28_00348 0.40 +0.9 380,996 + PFR28_00348 0.42 -3.0 380,996 + PFR28_00348 0.42 +2.0 380,996 + PFR28_00348 0.42 -2.9 380,996 + PFR28_00348 0.42 +1.9 380,996 + PFR28_00348 0.42 -3.1 380,997 - PFR28_00348 0.42 -1.1 380,997 - PFR28_00348 0.42 +2.3 380,997 - PFR28_00348 0.42 +0.9 380,997 - PFR28_00348 0.42 +0.7 380,997 - PFR28_00348 0.42 +0.1 380,997 - PFR28_00348 0.42 -2.4 380,999 + PFR28_00348 0.42 -1.4 381,000 - PFR28_00348 0.43 +0.2 381,005 + PFR28_00348 0.43 +0.6 381,005 + PFR28_00348 0.43 +1.3 381,005 + PFR28_00348 0.43 -2.5 381,006 - PFR28_00348 0.43 +4.0 381,006 - PFR28_00348 0.43 +0.0 381,006 - PFR28_00348 0.43 +3.8 381,006 - PFR28_00348 0.43 +1.4 381,006 - PFR28_00348 0.43 -0.6 381,006 - PFR28_00348 0.43 +0.5 381,006 - PFR28_00348 0.43 +2.6 381,006 - PFR28_00348 0.43 -1.6 381,006 - PFR28_00348 0.43 -1.0 381,006 - PFR28_00348 0.43 +4.2 381,052 + PFR28_00348 0.46 -0.4 381,053 - PFR28_00348 0.46 +0.5 381,053 - PFR28_00348 0.46 +0.1 381,090 + PFR28_00348 0.49 -0.9 381,091 - PFR28_00348 0.49 -1.3 381,091 - PFR28_00348 0.49 +2.4 381,257 - PFR28_00348 0.60 -0.9
Or see this region's nucleotide sequence