Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18030

Experiment: R2A with 3-octanone 5.3129 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS18020 and ABIE41_RS18025 are separated by 9 nucleotidesABIE41_RS18025 and ABIE41_RS18030 overlap by 58 nucleotidesABIE41_RS18030 and ABIE41_RS18035 are separated by 157 nucleotidesABIE41_RS18035 and ABIE41_RS18040 are separated by 190 nucleotidesABIE41_RS18040 and ABIE41_RS18045 are separated by 10 nucleotides ABIE41_RS18020: ABIE41_RS18020 - amidohydrolase family protein, at 3,712,055 to 3,713,539 _RS18020 ABIE41_RS18025: ABIE41_RS18025 - amidohydrolase, at 3,713,549 to 3,714,403 _RS18025 ABIE41_RS18030: ABIE41_RS18030 - hypothetical protein, at 3,714,346 to 3,714,744 _RS18030 ABIE41_RS18035: ABIE41_RS18035 - tRNA-Asp, at 3,714,902 to 3,714,978 _RS18035 ABIE41_RS18040: ABIE41_RS18040 - tRNA-Val, at 3,715,169 to 3,715,244 _RS18040 ABIE41_RS18045: ABIE41_RS18045 - methyl-accepting chemotaxis protein, at 3,715,255 to 3,717,060 _RS18045 Position (kb) 3714 3715Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3713.433 kb on - strandat 3713.433 kb on - strandat 3713.433 kb on - strandat 3713.700 kb on + strand, within ABIE41_RS18025at 3713.759 kb on + strand, within ABIE41_RS18025at 3714.481 kb on - strand, within ABIE41_RS18030at 3714.481 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.537 kb on - strand, within ABIE41_RS18030at 3714.818 kb on + strandat 3714.819 kb on - strandat 3714.872 kb on - strandat 3715.098 kb on + strandat 3715.099 kb on - strandat 3715.154 kb on + strandat 3715.154 kb on + strandat 3715.154 kb on + strandat 3715.154 kb on + strandat 3715.154 kb on + strandat 3715.155 kb on - strandat 3715.202 kb on + strand, within ABIE41_RS18040at 3715.203 kb on - strand, within ABIE41_RS18040at 3715.407 kb on + strandat 3715.407 kb on + strandat 3715.407 kb on + strandat 3715.407 kb on + strandat 3715.408 kb on - strandat 3715.408 kb on - strandat 3715.408 kb on - strandat 3715.437 kb on + strand, within ABIE41_RS18045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
remove
3,713,433 - -1.6
3,713,433 - -1.4
3,713,433 - +1.2
3,713,700 + ABIE41_RS18025 0.18 +0.9
3,713,759 + ABIE41_RS18025 0.25 +0.3
3,714,481 - ABIE41_RS18030 0.34 -1.7
3,714,481 - ABIE41_RS18030 0.34 +1.6
3,714,537 - ABIE41_RS18030 0.48 +0.5
3,714,537 - ABIE41_RS18030 0.48 +1.0
3,714,537 - ABIE41_RS18030 0.48 +0.1
3,714,537 - ABIE41_RS18030 0.48 -0.7
3,714,537 - ABIE41_RS18030 0.48 +1.7
3,714,537 - ABIE41_RS18030 0.48 -1.0
3,714,818 + -0.1
3,714,819 - +0.5
3,714,872 - +1.2
3,715,098 + +3.0
3,715,099 - -3.0
3,715,154 + +0.8
3,715,154 + +0.1
3,715,154 + +0.3
3,715,154 + -0.1
3,715,154 + +0.8
3,715,155 - -1.0
3,715,202 + ABIE41_RS18040 0.43 +0.3
3,715,203 - ABIE41_RS18040 0.45 -0.1
3,715,407 + -0.4
3,715,407 + -0.7
3,715,407 + -2.0
3,715,407 + -0.6
3,715,408 - -0.1
3,715,408 - +1.3
3,715,408 - -0.6
3,715,437 + ABIE41_RS18045 0.10 +0.4

Or see this region's nucleotide sequence