Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07900

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07895 and ABIE41_RS07900 are separated by 66 nucleotidesABIE41_RS07900 and ABIE41_RS07905 are separated by 107 nucleotidesABIE41_RS07905 and ABIE41_RS07910 are separated by 54 nucleotides ABIE41_RS07895: ABIE41_RS07895 - F0F1 ATP synthase subunit gamma, at 1,622,760 to 1,623,629 _RS07895 ABIE41_RS07900: ABIE41_RS07900 - F0F1 ATP synthase subunit beta, at 1,623,696 to 1,625,165 _RS07900 ABIE41_RS07905: ABIE41_RS07905 - F0F1 ATP synthase subunit epsilon, at 1,625,273 to 1,625,686 _RS07905 ABIE41_RS07910: ABIE41_RS07910 - VOC family protein, at 1,625,741 to 1,626,121 _RS07910 Position (kb) 1623 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1622.743 kb on + strandat 1626.054 kb on + strand, within ABIE41_RS07910at 1626.054 kb on + strand, within ABIE41_RS07910

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,622,743 + -0.6
1,626,054 + ABIE41_RS07910 0.82 -0.4
1,626,054 + ABIE41_RS07910 0.82 +1.2

Or see this region's nucleotide sequence