Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06010

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06005 and ABIE41_RS06010 are separated by 206 nucleotidesABIE41_RS06010 and ABIE41_RS06015 are separated by 174 nucleotides ABIE41_RS06005: ABIE41_RS06005 - TorF family putative porin, at 1,238,277 to 1,239,197 _RS06005 ABIE41_RS06010: ABIE41_RS06010 - murein L,D-transpeptidase family protein, at 1,239,404 to 1,240,843 _RS06010 ABIE41_RS06015: ABIE41_RS06015 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,241,018 to 1,241,971 _RS06015 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1238.470 kb on + strand, within ABIE41_RS06005at 1238.470 kb on + strand, within ABIE41_RS06005at 1238.470 kb on + strand, within ABIE41_RS06005at 1238.470 kb on + strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.471 kb on - strand, within ABIE41_RS06005at 1238.476 kb on + strand, within ABIE41_RS06005at 1238.476 kb on + strand, within ABIE41_RS06005at 1238.477 kb on - strand, within ABIE41_RS06005at 1238.477 kb on - strand, within ABIE41_RS06005at 1238.498 kb on - strand, within ABIE41_RS06005at 1238.503 kb on + strand, within ABIE41_RS06005at 1238.504 kb on - strand, within ABIE41_RS06005at 1238.566 kb on + strand, within ABIE41_RS06005at 1238.567 kb on - strand, within ABIE41_RS06005at 1238.618 kb on - strand, within ABIE41_RS06005at 1238.618 kb on - strand, within ABIE41_RS06005at 1238.618 kb on - strand, within ABIE41_RS06005at 1238.638 kb on + strand, within ABIE41_RS06005at 1238.638 kb on + strand, within ABIE41_RS06005at 1238.638 kb on + strand, within ABIE41_RS06005at 1238.638 kb on + strand, within ABIE41_RS06005at 1238.639 kb on - strand, within ABIE41_RS06005at 1238.639 kb on - strand, within ABIE41_RS06005at 1238.639 kb on - strand, within ABIE41_RS06005at 1238.639 kb on - strand, within ABIE41_RS06005at 1238.677 kb on + strand, within ABIE41_RS06005at 1238.678 kb on - strand, within ABIE41_RS06005at 1238.678 kb on - strand, within ABIE41_RS06005at 1238.678 kb on - strand, within ABIE41_RS06005at 1238.678 kb on - strand, within ABIE41_RS06005at 1238.678 kb on - strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.713 kb on + strand, within ABIE41_RS06005at 1238.714 kb on - strand, within ABIE41_RS06005at 1238.714 kb on - strand, within ABIE41_RS06005at 1238.720 kb on - strand, within ABIE41_RS06005at 1238.720 kb on - strand, within ABIE41_RS06005at 1238.734 kb on + strand, within ABIE41_RS06005at 1238.734 kb on + strand, within ABIE41_RS06005at 1238.810 kb on - strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.812 kb on + strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.813 kb on - strand, within ABIE41_RS06005at 1238.815 kb on + strand, within ABIE41_RS06005at 1238.817 kb on - strand, within ABIE41_RS06005at 1238.873 kb on - strand, within ABIE41_RS06005at 1238.924 kb on - strand, within ABIE41_RS06005at 1238.924 kb on - strand, within ABIE41_RS06005at 1238.924 kb on - strand, within ABIE41_RS06005at 1238.935 kb on + strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.936 kb on - strand, within ABIE41_RS06005at 1238.950 kb on + strand, within ABIE41_RS06005at 1238.950 kb on + strand, within ABIE41_RS06005at 1238.951 kb on - strand, within ABIE41_RS06005at 1239.019 kb on + strand, within ABIE41_RS06005at 1239.304 kb on - strandat 1239.604 kb on - strand, within ABIE41_RS06010at 1239.604 kb on - strand, within ABIE41_RS06010at 1239.604 kb on - strand, within ABIE41_RS06010at 1240.032 kb on + strand, within ABIE41_RS06010at 1240.033 kb on - strand, within ABIE41_RS06010at 1240.033 kb on - strand, within ABIE41_RS06010at 1240.033 kb on - strand, within ABIE41_RS06010at 1240.033 kb on - strand, within ABIE41_RS06010at 1240.033 kb on - strand, within ABIE41_RS06010at 1240.152 kb on + strand, within ABIE41_RS06010at 1240.153 kb on - strand, within ABIE41_RS06010at 1240.203 kb on + strand, within ABIE41_RS06010at 1240.203 kb on + strand, within ABIE41_RS06010at 1240.204 kb on - strand, within ABIE41_RS06010at 1240.327 kb on + strand, within ABIE41_RS06010at 1240.350 kb on + strand, within ABIE41_RS06010at 1240.351 kb on - strand, within ABIE41_RS06010at 1240.351 kb on - strand, within ABIE41_RS06010at 1240.351 kb on - strand, within ABIE41_RS06010at 1240.351 kb on - strand, within ABIE41_RS06010at 1240.383 kb on + strand, within ABIE41_RS06010at 1240.383 kb on + strand, within ABIE41_RS06010at 1240.384 kb on - strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.485 kb on + strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.486 kb on - strand, within ABIE41_RS06010at 1240.488 kb on + strand, within ABIE41_RS06010at 1240.489 kb on - strand, within ABIE41_RS06010at 1240.489 kb on - strand, within ABIE41_RS06010at 1240.527 kb on + strand, within ABIE41_RS06010at 1240.527 kb on + strand, within ABIE41_RS06010at 1240.527 kb on + strand, within ABIE41_RS06010at 1240.527 kb on + strand, within ABIE41_RS06010at 1240.528 kb on - strand, within ABIE41_RS06010at 1240.528 kb on - strand, within ABIE41_RS06010at 1240.528 kb on - strand, within ABIE41_RS06010at 1240.528 kb on - strand, within ABIE41_RS06010at 1240.602 kb on + strand, within ABIE41_RS06010at 1240.603 kb on - strand, within ABIE41_RS06010at 1240.672 kb on - strand, within ABIE41_RS06010at 1240.672 kb on - strand, within ABIE41_RS06010at 1240.672 kb on - strand, within ABIE41_RS06010at 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.728 kb on + strandat 1240.729 kb on - strandat 1240.729 kb on - strandat 1240.729 kb on - strandat 1240.729 kb on - strandat 1240.818 kb on - strandat 1240.924 kb on + strandat 1240.924 kb on + strandat 1240.924 kb on + strandat 1240.924 kb on + strandat 1240.924 kb on + strandat 1240.925 kb on - strandat 1240.925 kb on - strandat 1240.933 kb on + strandat 1240.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,238,470 + ABIE41_RS06005 0.21 -1.9
1,238,470 + ABIE41_RS06005 0.21 -2.0
1,238,470 + ABIE41_RS06005 0.21 -2.9
1,238,470 + ABIE41_RS06005 0.21 +1.1
1,238,471 - ABIE41_RS06005 0.21 -0.3
1,238,471 - ABIE41_RS06005 0.21 -0.0
1,238,471 - ABIE41_RS06005 0.21 +0.7
1,238,471 - ABIE41_RS06005 0.21 +3.6
1,238,471 - ABIE41_RS06005 0.21 -0.4
1,238,471 - ABIE41_RS06005 0.21 +1.0
1,238,471 - ABIE41_RS06005 0.21 -2.6
1,238,471 - ABIE41_RS06005 0.21 -3.0
1,238,471 - ABIE41_RS06005 0.21 +3.6
1,238,476 + ABIE41_RS06005 0.22 +0.2
1,238,476 + ABIE41_RS06005 0.22 -1.5
1,238,477 - ABIE41_RS06005 0.22 +1.4
1,238,477 - ABIE41_RS06005 0.22 -0.6
1,238,498 - ABIE41_RS06005 0.24 +0.9
1,238,503 + ABIE41_RS06005 0.25 +0.5
1,238,504 - ABIE41_RS06005 0.25 -0.5
1,238,566 + ABIE41_RS06005 0.31 +0.6
1,238,567 - ABIE41_RS06005 0.31 +0.5
1,238,618 - ABIE41_RS06005 0.37 +1.1
1,238,618 - ABIE41_RS06005 0.37 +2.5
1,238,618 - ABIE41_RS06005 0.37 +0.3
1,238,638 + ABIE41_RS06005 0.39 +0.7
1,238,638 + ABIE41_RS06005 0.39 +0.1
1,238,638 + ABIE41_RS06005 0.39 -0.4
1,238,638 + ABIE41_RS06005 0.39 -0.9
1,238,639 - ABIE41_RS06005 0.39 -0.0
1,238,639 - ABIE41_RS06005 0.39 +0.5
1,238,639 - ABIE41_RS06005 0.39 +0.8
1,238,639 - ABIE41_RS06005 0.39 -0.1
1,238,677 + ABIE41_RS06005 0.43 -1.7
1,238,678 - ABIE41_RS06005 0.44 -0.6
1,238,678 - ABIE41_RS06005 0.44 +1.0
1,238,678 - ABIE41_RS06005 0.44 +0.8
1,238,678 - ABIE41_RS06005 0.44 -0.9
1,238,678 - ABIE41_RS06005 0.44 +0.3
1,238,713 + ABIE41_RS06005 0.47 +0.4
1,238,713 + ABIE41_RS06005 0.47 +0.4
1,238,713 + ABIE41_RS06005 0.47 -0.6
1,238,713 + ABIE41_RS06005 0.47 +1.0
1,238,713 + ABIE41_RS06005 0.47 +0.2
1,238,713 + ABIE41_RS06005 0.47 -0.1
1,238,713 + ABIE41_RS06005 0.47 +0.1
1,238,714 - ABIE41_RS06005 0.47 +1.1
1,238,714 - ABIE41_RS06005 0.47 +0.4
1,238,720 - ABIE41_RS06005 0.48 -0.2
1,238,720 - ABIE41_RS06005 0.48 +0.1
1,238,734 + ABIE41_RS06005 0.50 -4.0
1,238,734 + ABIE41_RS06005 0.50 +0.8
1,238,810 - ABIE41_RS06005 0.58 -0.4
1,238,812 + ABIE41_RS06005 0.58 -0.3
1,238,812 + ABIE41_RS06005 0.58 +2.1
1,238,812 + ABIE41_RS06005 0.58 +0.4
1,238,812 + ABIE41_RS06005 0.58 +2.6
1,238,812 + ABIE41_RS06005 0.58 -0.6
1,238,812 + ABIE41_RS06005 0.58 +0.6
1,238,813 - ABIE41_RS06005 0.58 +1.0
1,238,813 - ABIE41_RS06005 0.58 +2.0
1,238,813 - ABIE41_RS06005 0.58 -0.6
1,238,813 - ABIE41_RS06005 0.58 +0.0
1,238,813 - ABIE41_RS06005 0.58 -0.0
1,238,813 - ABIE41_RS06005 0.58 +1.5
1,238,813 - ABIE41_RS06005 0.58 -0.3
1,238,813 - ABIE41_RS06005 0.58 +0.3
1,238,815 + ABIE41_RS06005 0.58 +0.4
1,238,817 - ABIE41_RS06005 0.59 +1.3
1,238,873 - ABIE41_RS06005 0.65 -0.4
1,238,924 - ABIE41_RS06005 0.70 -1.5
1,238,924 - ABIE41_RS06005 0.70 +0.5
1,238,924 - ABIE41_RS06005 0.70 +1.2
1,238,935 + ABIE41_RS06005 0.71 -0.2
1,238,936 - ABIE41_RS06005 0.72 +0.1
1,238,936 - ABIE41_RS06005 0.72 +1.3
1,238,936 - ABIE41_RS06005 0.72 +0.9
1,238,936 - ABIE41_RS06005 0.72 +0.9
1,238,936 - ABIE41_RS06005 0.72 +1.4
1,238,936 - ABIE41_RS06005 0.72 -0.3
1,238,950 + ABIE41_RS06005 0.73 +0.5
1,238,950 + ABIE41_RS06005 0.73 +0.9
1,238,951 - ABIE41_RS06005 0.73 +0.8
1,239,019 + ABIE41_RS06005 0.81 +1.6
1,239,304 - -0.1
1,239,604 - ABIE41_RS06010 0.14 -0.2
1,239,604 - ABIE41_RS06010 0.14 +0.2
1,239,604 - ABIE41_RS06010 0.14 +0.2
1,240,032 + ABIE41_RS06010 0.44 -1.6
1,240,033 - ABIE41_RS06010 0.44 -0.9
1,240,033 - ABIE41_RS06010 0.44 -2.6
1,240,033 - ABIE41_RS06010 0.44 -0.6
1,240,033 - ABIE41_RS06010 0.44 +0.7
1,240,033 - ABIE41_RS06010 0.44 -1.8
1,240,152 + ABIE41_RS06010 0.52 -0.2
1,240,153 - ABIE41_RS06010 0.52 -0.8
1,240,203 + ABIE41_RS06010 0.55 -4.1
1,240,203 + ABIE41_RS06010 0.55 +0.4
1,240,204 - ABIE41_RS06010 0.56 +0.4
1,240,327 + ABIE41_RS06010 0.64 -0.7
1,240,350 + ABIE41_RS06010 0.66 -0.6
1,240,351 - ABIE41_RS06010 0.66 +0.1
1,240,351 - ABIE41_RS06010 0.66 -0.1
1,240,351 - ABIE41_RS06010 0.66 +2.0
1,240,351 - ABIE41_RS06010 0.66 +0.6
1,240,383 + ABIE41_RS06010 0.68 +0.9
1,240,383 + ABIE41_RS06010 0.68 +0.3
1,240,384 - ABIE41_RS06010 0.68 -0.2
1,240,485 + ABIE41_RS06010 0.75 +0.5
1,240,485 + ABIE41_RS06010 0.75 -1.6
1,240,485 + ABIE41_RS06010 0.75 +2.6
1,240,485 + ABIE41_RS06010 0.75 +1.0
1,240,485 + ABIE41_RS06010 0.75 +0.4
1,240,485 + ABIE41_RS06010 0.75 -0.1
1,240,485 + ABIE41_RS06010 0.75 +0.2
1,240,485 + ABIE41_RS06010 0.75 +0.4
1,240,485 + ABIE41_RS06010 0.75 -0.6
1,240,485 + ABIE41_RS06010 0.75 +0.3
1,240,486 - ABIE41_RS06010 0.75 +0.6
1,240,486 - ABIE41_RS06010 0.75 +0.5
1,240,486 - ABIE41_RS06010 0.75 -0.6
1,240,486 - ABIE41_RS06010 0.75 -2.5
1,240,486 - ABIE41_RS06010 0.75 -0.2
1,240,486 - ABIE41_RS06010 0.75 -3.5
1,240,488 + ABIE41_RS06010 0.75 +0.2
1,240,489 - ABIE41_RS06010 0.75 -0.0
1,240,489 - ABIE41_RS06010 0.75 +0.1
1,240,527 + ABIE41_RS06010 0.78 +0.1
1,240,527 + ABIE41_RS06010 0.78 -3.7
1,240,527 + ABIE41_RS06010 0.78 -1.5
1,240,527 + ABIE41_RS06010 0.78 -1.8
1,240,528 - ABIE41_RS06010 0.78 -1.5
1,240,528 - ABIE41_RS06010 0.78 -0.0
1,240,528 - ABIE41_RS06010 0.78 -1.9
1,240,528 - ABIE41_RS06010 0.78 +0.7
1,240,602 + ABIE41_RS06010 0.83 -1.5
1,240,603 - ABIE41_RS06010 0.83 -1.8
1,240,672 - ABIE41_RS06010 0.88 -0.6
1,240,672 - ABIE41_RS06010 0.88 -0.6
1,240,672 - ABIE41_RS06010 0.88 +0.0
1,240,728 + +0.3
1,240,728 + +1.0
1,240,728 + +0.4
1,240,728 + -0.2
1,240,728 + -1.3
1,240,728 + +3.5
1,240,728 + +0.6
1,240,729 - +1.7
1,240,729 - -1.1
1,240,729 - -0.3
1,240,729 - -0.3
1,240,818 - +1.6
1,240,924 + +0.4
1,240,924 + -1.8
1,240,924 + -1.7
1,240,924 + +1.2
1,240,924 + -0.7
1,240,925 - -0.5
1,240,925 - -1.0
1,240,933 + +1.3
1,240,992 - +0.0

Or see this region's nucleotide sequence