Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03455

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03450 and ABIE41_RS03455 are separated by 65 nucleotidesABIE41_RS03455 and ABIE41_RS03460 overlap by 1 nucleotidesABIE41_RS03460 and ABIE41_RS03465 are separated by 7 nucleotides ABIE41_RS03450: ABIE41_RS03450 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 717,299 to 718,597 _RS03450 ABIE41_RS03455: ABIE41_RS03455 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 718,663 to 719,544 _RS03455 ABIE41_RS03460: ABIE41_RS03460 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 719,544 to 720,392 _RS03460 ABIE41_RS03465: ABIE41_RS03465 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 720,400 to 721,479 _RS03465 Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2 3at 717.663 kb on - strand, within ABIE41_RS03450at 717.663 kb on - strand, within ABIE41_RS03450at 717.663 kb on - strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.725 kb on + strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 717.726 kb on - strand, within ABIE41_RS03450at 718.022 kb on + strand, within ABIE41_RS03450at 718.155 kb on - strand, within ABIE41_RS03450at 718.157 kb on + strand, within ABIE41_RS03450at 718.158 kb on - strand, within ABIE41_RS03450at 718.158 kb on - strand, within ABIE41_RS03450at 718.241 kb on + strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.242 kb on - strand, within ABIE41_RS03450at 718.316 kb on + strand, within ABIE41_RS03450at 718.317 kb on - strand, within ABIE41_RS03450at 718.331 kb on - strand, within ABIE41_RS03450at 718.340 kb on + strand, within ABIE41_RS03450at 718.340 kb on + strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.341 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.368 kb on - strand, within ABIE41_RS03450at 718.678 kb on + strandat 718.679 kb on - strandat 718.679 kb on - strandat 718.679 kb on - strandat 718.747 kb on + strandat 718.748 kb on - strandat 718.748 kb on - strandat 718.748 kb on - strandat 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.834 kb on + strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.835 kb on - strand, within ABIE41_RS03455at 718.978 kb on + strand, within ABIE41_RS03455at 718.978 kb on + strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 718.979 kb on - strand, within ABIE41_RS03455at 719.002 kb on + strand, within ABIE41_RS03455at 719.003 kb on - strand, within ABIE41_RS03455at 719.003 kb on - strand, within ABIE41_RS03455at 719.174 kb on - strand, within ABIE41_RS03455at 719.174 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.333 kb on - strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.410 kb on + strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.411 kb on - strand, within ABIE41_RS03455at 719.484 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.539 kb on + strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.540 kb on - strandat 719.580 kb on + strandat 719.580 kb on + strandat 719.581 kb on - strandat 719.581 kb on - strandat 719.581 kb on - strandat 719.689 kb on - strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.715 kb on + strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.716 kb on - strand, within ABIE41_RS03460at 719.719 kb on - strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.844 kb on + strand, within ABIE41_RS03460at 719.845 kb on - strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.856 kb on + strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.857 kb on - strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.979 kb on + strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 719.980 kb on - strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.174 kb on + strand, within ABIE41_RS03460at 720.175 kb on - strand, within ABIE41_RS03460at 720.175 kb on - strand, within ABIE41_RS03460at 720.189 kb on + strand, within ABIE41_RS03460at 720.190 kb on - strand, within ABIE41_RS03460at 720.190 kb on - strand, within ABIE41_RS03460at 720.390 kb on + strandat 720.390 kb on + strandat 720.390 kb on + strandat 720.391 kb on - strandat 720.391 kb on - strandat 720.392 kb on - strandat 720.411 kb on + strandat 720.412 kb on - strandat 720.412 kb on - strandat 720.412 kb on - strandat 720.436 kb on + strandat 720.437 kb on - strandat 720.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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717,663 - ABIE41_RS03450 0.28 -0.5
717,663 - ABIE41_RS03450 0.28 -0.4
717,663 - ABIE41_RS03450 0.28 -0.9
717,725 + ABIE41_RS03450 0.33 +0.5
717,725 + ABIE41_RS03450 0.33 -0.3
717,725 + ABIE41_RS03450 0.33 -0.0
717,725 + ABIE41_RS03450 0.33 +0.6
717,726 - ABIE41_RS03450 0.33 -0.9
717,726 - ABIE41_RS03450 0.33 -0.9
717,726 - ABIE41_RS03450 0.33 -0.2
717,726 - ABIE41_RS03450 0.33 +0.7
717,726 - ABIE41_RS03450 0.33 +0.0
717,726 - ABIE41_RS03450 0.33 -0.3
718,022 + ABIE41_RS03450 0.56 -0.6
718,155 - ABIE41_RS03450 0.66 +1.3
718,157 + ABIE41_RS03450 0.66 +0.2
718,158 - ABIE41_RS03450 0.66 +1.6
718,158 - ABIE41_RS03450 0.66 -0.2
718,241 + ABIE41_RS03450 0.73 +0.0
718,242 - ABIE41_RS03450 0.73 -0.6
718,242 - ABIE41_RS03450 0.73 -0.4
718,242 - ABIE41_RS03450 0.73 -2.2
718,316 + ABIE41_RS03450 0.78 -1.8
718,317 - ABIE41_RS03450 0.78 -0.9
718,331 - ABIE41_RS03450 0.79 -0.4
718,340 + ABIE41_RS03450 0.80 +0.0
718,340 + ABIE41_RS03450 0.80 -0.2
718,341 - ABIE41_RS03450 0.80 +0.2
718,341 - ABIE41_RS03450 0.80 -0.1
718,341 - ABIE41_RS03450 0.80 -1.7
718,341 - ABIE41_RS03450 0.80 -2.5
718,368 - ABIE41_RS03450 0.82 -2.7
718,368 - ABIE41_RS03450 0.82 -0.2
718,368 - ABIE41_RS03450 0.82 +0.6
718,368 - ABIE41_RS03450 0.82 -0.8
718,678 + -0.5
718,679 - +0.3
718,679 - +0.5
718,679 - -0.1
718,747 + -1.6
718,748 - -0.7
718,748 - +0.4
718,748 - +0.1
718,834 + ABIE41_RS03455 0.19 -0.9
718,834 + ABIE41_RS03455 0.19 -1.4
718,834 + ABIE41_RS03455 0.19 -0.1
718,834 + ABIE41_RS03455 0.19 -1.9
718,834 + ABIE41_RS03455 0.19 +0.3
718,834 + ABIE41_RS03455 0.19 -0.3
718,835 - ABIE41_RS03455 0.20 -0.9
718,835 - ABIE41_RS03455 0.20 -0.9
718,835 - ABIE41_RS03455 0.20 +0.6
718,978 + ABIE41_RS03455 0.36 -1.0
718,978 + ABIE41_RS03455 0.36 -2.6
718,979 - ABIE41_RS03455 0.36 -0.7
718,979 - ABIE41_RS03455 0.36 -0.1
718,979 - ABIE41_RS03455 0.36 +0.4
719,002 + ABIE41_RS03455 0.38 -0.5
719,003 - ABIE41_RS03455 0.39 -0.7
719,003 - ABIE41_RS03455 0.39 -1.1
719,174 - ABIE41_RS03455 0.58 +0.3
719,174 - ABIE41_RS03455 0.58 -0.9
719,333 - ABIE41_RS03455 0.76 -0.3
719,333 - ABIE41_RS03455 0.76 +1.1
719,333 - ABIE41_RS03455 0.76 +0.4
719,333 - ABIE41_RS03455 0.76 -1.3
719,410 + ABIE41_RS03455 0.85 +0.3
719,410 + ABIE41_RS03455 0.85 +0.3
719,410 + ABIE41_RS03455 0.85 -0.4
719,410 + ABIE41_RS03455 0.85 -0.7
719,411 - ABIE41_RS03455 0.85 +0.1
719,411 - ABIE41_RS03455 0.85 +0.1
719,484 + +0.0
719,539 + -0.9
719,539 + -1.6
719,539 + +1.5
719,539 + -0.3
719,539 + +0.6
719,539 + +1.1
719,540 - +1.1
719,540 - -0.1
719,540 - +0.3
719,540 - +0.8
719,540 - +0.1
719,580 + -2.3
719,580 + -1.8
719,581 - -1.9
719,581 - -0.3
719,581 - +0.0
719,689 - ABIE41_RS03460 0.17 +0.2
719,715 + ABIE41_RS03460 0.20 -0.5
719,715 + ABIE41_RS03460 0.20 +0.1
719,715 + ABIE41_RS03460 0.20 +1.4
719,715 + ABIE41_RS03460 0.20 +2.1
719,716 - ABIE41_RS03460 0.20 -1.1
719,716 - ABIE41_RS03460 0.20 +0.9
719,716 - ABIE41_RS03460 0.20 +3.1
719,716 - ABIE41_RS03460 0.20 -0.5
719,719 - ABIE41_RS03460 0.21 -0.9
719,844 + ABIE41_RS03460 0.35 +0.2
719,844 + ABIE41_RS03460 0.35 +0.6
719,844 + ABIE41_RS03460 0.35 +0.3
719,845 - ABIE41_RS03460 0.35 +0.1
719,856 + ABIE41_RS03460 0.37 -1.8
719,856 + ABIE41_RS03460 0.37 +1.6
719,856 + ABIE41_RS03460 0.37 -2.0
719,857 - ABIE41_RS03460 0.37 -1.3
719,857 - ABIE41_RS03460 0.37 +0.6
719,857 - ABIE41_RS03460 0.37 +2.6
719,857 - ABIE41_RS03460 0.37 -0.1
719,979 + ABIE41_RS03460 0.51 +0.5
719,979 + ABIE41_RS03460 0.51 +0.6
719,979 + ABIE41_RS03460 0.51 +0.6
719,979 + ABIE41_RS03460 0.51 +0.4
719,979 + ABIE41_RS03460 0.51 -1.7
719,979 + ABIE41_RS03460 0.51 -0.3
719,979 + ABIE41_RS03460 0.51 +0.8
719,979 + ABIE41_RS03460 0.51 -0.9
719,979 + ABIE41_RS03460 0.51 +0.5
719,980 - ABIE41_RS03460 0.51 -0.3
719,980 - ABIE41_RS03460 0.51 -0.5
719,980 - ABIE41_RS03460 0.51 +2.4
719,980 - ABIE41_RS03460 0.51 -0.0
719,980 - ABIE41_RS03460 0.51 +1.5
719,980 - ABIE41_RS03460 0.51 +1.5
719,980 - ABIE41_RS03460 0.51 -0.1
719,980 - ABIE41_RS03460 0.51 +0.7
719,980 - ABIE41_RS03460 0.51 +0.1
720,174 + ABIE41_RS03460 0.74 -1.8
720,174 + ABIE41_RS03460 0.74 -1.7
720,174 + ABIE41_RS03460 0.74 +0.9
720,175 - ABIE41_RS03460 0.74 -0.7
720,175 - ABIE41_RS03460 0.74 +0.4
720,189 + ABIE41_RS03460 0.76 +0.2
720,190 - ABIE41_RS03460 0.76 +0.4
720,190 - ABIE41_RS03460 0.76 +2.3
720,390 + -0.3
720,390 + +0.1
720,390 + +0.0
720,391 - +0.3
720,391 - +1.6
720,392 - -0.7
720,411 + -1.0
720,412 - +1.0
720,412 - -1.8
720,412 - -0.7
720,436 + -0.1
720,437 - +0.1
720,437 - +0.7

Or see this region's nucleotide sequence