Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23215

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23210 and ABIE41_RS23215 are separated by 994 nucleotidesABIE41_RS23215 and ABIE41_RS23220 are separated by 83 nucleotides ABIE41_RS23210: ABIE41_RS23210 - pseudouridine synthase, at 4,774,029 to 4,775,025 _RS23210 ABIE41_RS23215: ABIE41_RS23215 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 4,776,020 to 4,776,586 _RS23215 ABIE41_RS23220: ABIE41_RS23220 - DMT family transporter, at 4,776,670 to 4,777,563 _RS23220 Position (kb) 4776 4777Strain fitness (log2 ratio) -2 -1 0 1 2at 4775.565 kb on + strandat 4775.566 kb on - strandat 4775.680 kb on + strandat 4775.797 kb on + strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.798 kb on - strandat 4775.854 kb on - strandat 4775.854 kb on - strandat 4776.143 kb on + strand, within ABIE41_RS23215at 4776.143 kb on + strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.144 kb on - strand, within ABIE41_RS23215at 4776.542 kb on + strandat 4776.660 kb on + strandat 4776.660 kb on + strandat 4776.660 kb on + strandat 4776.661 kb on - strandat 4776.661 kb on - strandat 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.357 kb on + strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220at 4777.358 kb on - strand, within ABIE41_RS23220

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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4,775,565 + +0.2
4,775,566 - -0.5
4,775,680 + +0.2
4,775,797 + +1.1
4,775,798 - +1.0
4,775,798 - -0.3
4,775,798 - +1.8
4,775,798 - +0.6
4,775,798 - -0.2
4,775,854 - -0.6
4,775,854 - +2.3
4,776,143 + ABIE41_RS23215 0.22 +0.3
4,776,143 + ABIE41_RS23215 0.22 -0.2
4,776,144 - ABIE41_RS23215 0.22 -1.0
4,776,144 - ABIE41_RS23215 0.22 -0.7
4,776,144 - ABIE41_RS23215 0.22 -0.7
4,776,144 - ABIE41_RS23215 0.22 -1.3
4,776,542 + -1.2
4,776,660 + -1.8
4,776,660 + +0.6
4,776,660 + +0.2
4,776,661 - -0.1
4,776,661 - -0.2
4,777,357 + ABIE41_RS23220 0.77 +0.7
4,777,357 + ABIE41_RS23220 0.77 -1.2
4,777,357 + ABIE41_RS23220 0.77 -0.3
4,777,357 + ABIE41_RS23220 0.77 -0.6
4,777,358 - ABIE41_RS23220 0.77 +1.0
4,777,358 - ABIE41_RS23220 0.77 -0.5
4,777,358 - ABIE41_RS23220 0.77 +0.4
4,777,358 - ABIE41_RS23220 0.77 +1.8

Or see this region's nucleotide sequence