Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21345

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21335 and ABIE41_RS21340 are separated by 30 nucleotidesABIE41_RS21340 and ABIE41_RS21345 are separated by 33 nucleotidesABIE41_RS21345 and ABIE41_RS21350 are separated by 40 nucleotidesABIE41_RS21350 and ABIE41_RS21355 are separated by 3 nucleotides ABIE41_RS21335: ABIE41_RS21335 - CmpA/NrtA family ABC transporter substrate-binding protein, at 4,385,935 to 4,386,981 _RS21335 ABIE41_RS21340: ABIE41_RS21340 - ANTAR domain-containing protein, at 4,387,012 to 4,387,596 _RS21340 ABIE41_RS21345: ABIE41_RS21345 - HupE/UreJ family protein, at 4,387,630 to 4,388,190 _RS21345 ABIE41_RS21350: ABIE41_RS21350 - urease accessory protein UreG, at 4,388,231 to 4,388,863 _RS21350 ABIE41_RS21355: ABIE41_RS21355 - DUF3995 domain-containing protein, at 4,388,867 to 4,389,304 _RS21355 Position (kb) 4387 4388 4389Strain fitness (log2 ratio) -1 0 1 2at 4386.646 kb on - strand, within ABIE41_RS21335at 4386.807 kb on + strand, within ABIE41_RS21335at 4386.807 kb on + strand, within ABIE41_RS21335at 4386.808 kb on - strand, within ABIE41_RS21335at 4386.808 kb on - strand, within ABIE41_RS21335at 4386.808 kb on - strand, within ABIE41_RS21335at 4386.808 kb on - strand, within ABIE41_RS21335at 4386.808 kb on - strand, within ABIE41_RS21335at 4387.103 kb on + strand, within ABIE41_RS21340at 4387.103 kb on + strand, within ABIE41_RS21340at 4387.103 kb on + strand, within ABIE41_RS21340at 4387.104 kb on - strand, within ABIE41_RS21340at 4387.104 kb on - strand, within ABIE41_RS21340at 4387.104 kb on - strand, within ABIE41_RS21340at 4387.291 kb on - strand, within ABIE41_RS21340at 4387.292 kb on + strand, within ABIE41_RS21340at 4387.292 kb on + strand, within ABIE41_RS21340at 4387.292 kb on + strand, within ABIE41_RS21340at 4387.292 kb on + strand, within ABIE41_RS21340at 4387.292 kb on + strand, within ABIE41_RS21340at 4387.293 kb on - strand, within ABIE41_RS21340at 4387.293 kb on - strand, within ABIE41_RS21340at 4387.293 kb on - strand, within ABIE41_RS21340at 4387.293 kb on - strand, within ABIE41_RS21340at 4387.776 kb on - strand, within ABIE41_RS21345at 4388.080 kb on + strand, within ABIE41_RS21345at 4388.081 kb on - strand, within ABIE41_RS21345at 4388.490 kb on + strand, within ABIE41_RS21350at 4388.490 kb on + strand, within ABIE41_RS21350at 4388.490 kb on + strand, within ABIE41_RS21350at 4388.491 kb on - strand, within ABIE41_RS21350at 4388.491 kb on - strand, within ABIE41_RS21350at 4388.727 kb on + strand, within ABIE41_RS21350at 4388.728 kb on - strand, within ABIE41_RS21350at 4388.728 kb on - strand, within ABIE41_RS21350at 4388.757 kb on + strand, within ABIE41_RS21350at 4388.928 kb on + strand, within ABIE41_RS21355at 4388.928 kb on + strand, within ABIE41_RS21355at 4388.928 kb on + strand, within ABIE41_RS21355at 4388.928 kb on + strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355at 4388.929 kb on - strand, within ABIE41_RS21355

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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4,386,646 - ABIE41_RS21335 0.68 +0.1
4,386,807 + ABIE41_RS21335 0.83 -1.1
4,386,807 + ABIE41_RS21335 0.83 -0.3
4,386,808 - ABIE41_RS21335 0.83 +1.8
4,386,808 - ABIE41_RS21335 0.83 -0.2
4,386,808 - ABIE41_RS21335 0.83 +1.8
4,386,808 - ABIE41_RS21335 0.83 -1.4
4,386,808 - ABIE41_RS21335 0.83 -0.1
4,387,103 + ABIE41_RS21340 0.16 -1.0
4,387,103 + ABIE41_RS21340 0.16 +1.2
4,387,103 + ABIE41_RS21340 0.16 -0.2
4,387,104 - ABIE41_RS21340 0.16 -0.1
4,387,104 - ABIE41_RS21340 0.16 +0.7
4,387,104 - ABIE41_RS21340 0.16 +0.7
4,387,291 - ABIE41_RS21340 0.48 -0.5
4,387,292 + ABIE41_RS21340 0.48 +0.5
4,387,292 + ABIE41_RS21340 0.48 -0.4
4,387,292 + ABIE41_RS21340 0.48 -0.5
4,387,292 + ABIE41_RS21340 0.48 +0.0
4,387,292 + ABIE41_RS21340 0.48 +0.5
4,387,293 - ABIE41_RS21340 0.48 -1.5
4,387,293 - ABIE41_RS21340 0.48 -0.1
4,387,293 - ABIE41_RS21340 0.48 -0.0
4,387,293 - ABIE41_RS21340 0.48 -0.8
4,387,776 - ABIE41_RS21345 0.26 -0.2
4,388,080 + ABIE41_RS21345 0.80 -1.5
4,388,081 - ABIE41_RS21345 0.80 +0.2
4,388,490 + ABIE41_RS21350 0.41 -1.2
4,388,490 + ABIE41_RS21350 0.41 -0.3
4,388,490 + ABIE41_RS21350 0.41 +1.2
4,388,491 - ABIE41_RS21350 0.41 -0.1
4,388,491 - ABIE41_RS21350 0.41 -0.6
4,388,727 + ABIE41_RS21350 0.78 -0.1
4,388,728 - ABIE41_RS21350 0.79 -0.3
4,388,728 - ABIE41_RS21350 0.79 -1.6
4,388,757 + ABIE41_RS21350 0.83 +0.4
4,388,928 + ABIE41_RS21355 0.14 -1.2
4,388,928 + ABIE41_RS21355 0.14 -0.1
4,388,928 + ABIE41_RS21355 0.14 +0.6
4,388,928 + ABIE41_RS21355 0.14 +0.1
4,388,929 - ABIE41_RS21355 0.14 +0.8
4,388,929 - ABIE41_RS21355 0.14 -0.9
4,388,929 - ABIE41_RS21355 0.14 -0.1
4,388,929 - ABIE41_RS21355 0.14 -0.7
4,388,929 - ABIE41_RS21355 0.14 -0.6
4,388,929 - ABIE41_RS21355 0.14 +1.0
4,388,929 - ABIE41_RS21355 0.14 +0.1

Or see this region's nucleotide sequence