Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21050 and ABIE41_RS21055 are separated by 130 nucleotides ABIE41_RS21055 and ABIE41_RS21060 are separated by 130 nucleotides ABIE41_RS21060 and ABIE41_RS21065 are separated by 5 nucleotides
ABIE41_RS21050: ABIE41_RS21050 - response regulator transcription factor, at 4,329,948 to 4,330,481
_RS21050
ABIE41_RS21055: ABIE41_RS21055 - DUF1684 domain-containing protein, at 4,330,612 to 4,331,274
_RS21055
ABIE41_RS21060: ABIE41_RS21060 - glycine betaine ABC transporter substrate-binding protein, at 4,331,405 to 4,332,289
_RS21060
ABIE41_RS21065: ABIE41_RS21065 - aromatic amino acid lyase, at 4,332,295 to 4,333,848
_RS21065
Position (kb) 4331
4332
4333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4330.852 kb on + strand, within ABIE41_RS21055 at 4330.852 kb on + strand, within ABIE41_RS21055 at 4330.853 kb on - strand, within ABIE41_RS21055 at 4331.005 kb on + strand, within ABIE41_RS21055 at 4331.005 kb on + strand, within ABIE41_RS21055 at 4331.020 kb on + strand, within ABIE41_RS21055 at 4331.020 kb on + strand, within ABIE41_RS21055 at 4331.021 kb on - strand, within ABIE41_RS21055 at 4331.089 kb on + strand, within ABIE41_RS21055 at 4331.089 kb on + strand, within ABIE41_RS21055 at 4331.089 kb on - strand, within ABIE41_RS21055 at 4331.090 kb on - strand, within ABIE41_RS21055 at 4331.090 kb on - strand, within ABIE41_RS21055 at 4331.167 kb on + strand, within ABIE41_RS21055 at 4331.167 kb on + strand, within ABIE41_RS21055 at 4331.168 kb on - strand, within ABIE41_RS21055 at 4331.168 kb on - strand, within ABIE41_RS21055 at 4331.168 kb on - strand, within ABIE41_RS21055 at 4331.168 kb on - strand, within ABIE41_RS21055 at 4331.170 kb on + strand, within ABIE41_RS21055 at 4331.368 kb on + strand at 4331.368 kb on + strand at 4331.368 kb on + strand at 4331.369 kb on - strand at 4331.646 kb on - strand, within ABIE41_RS21060 at 4331.735 kb on + strand, within ABIE41_RS21060 at 4331.736 kb on - strand, within ABIE41_RS21060 at 4331.790 kb on - strand, within ABIE41_RS21060 at 4331.937 kb on - strand, within ABIE41_RS21060 at 4331.937 kb on - strand, within ABIE41_RS21060 at 4331.937 kb on - strand, within ABIE41_RS21060 at 4331.937 kb on - strand, within ABIE41_RS21060 at 4332.101 kb on + strand, within ABIE41_RS21060 at 4332.482 kb on - strand, within ABIE41_RS21065 at 4332.482 kb on - strand, within ABIE41_RS21065 at 4332.620 kb on + strand, within ABIE41_RS21065 at 4332.621 kb on - strand, within ABIE41_RS21065 at 4332.621 kb on - strand, within ABIE41_RS21065 at 4332.621 kb on - strand, within ABIE41_RS21065 at 4332.624 kb on - strand, within ABIE41_RS21065 at 4332.624 kb on - strand, within ABIE41_RS21065 at 4332.624 kb on - strand, within ABIE41_RS21065 at 4333.051 kb on - strand, within ABIE41_RS21065
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,330,852 + ABIE41_RS21055 0.36 +2.0 4,330,852 + ABIE41_RS21055 0.36 -1.2 4,330,853 - ABIE41_RS21055 0.36 +0.6 4,331,005 + ABIE41_RS21055 0.59 +1.9 4,331,005 + ABIE41_RS21055 0.59 -0.5 4,331,020 + ABIE41_RS21055 0.62 -0.2 4,331,020 + ABIE41_RS21055 0.62 -0.1 4,331,021 - ABIE41_RS21055 0.62 -0.3 4,331,089 + ABIE41_RS21055 0.72 +0.2 4,331,089 + ABIE41_RS21055 0.72 -0.8 4,331,089 - ABIE41_RS21055 0.72 -0.3 4,331,090 - ABIE41_RS21055 0.72 -1.9 4,331,090 - ABIE41_RS21055 0.72 -0.2 4,331,167 + ABIE41_RS21055 0.84 +0.1 4,331,167 + ABIE41_RS21055 0.84 -0.9 4,331,168 - ABIE41_RS21055 0.84 +0.2 4,331,168 - ABIE41_RS21055 0.84 -0.4 4,331,168 - ABIE41_RS21055 0.84 -0.9 4,331,168 - ABIE41_RS21055 0.84 -0.4 4,331,170 + ABIE41_RS21055 0.84 -1.2 4,331,368 + +0.2 4,331,368 + +0.1 4,331,368 + -1.0 4,331,369 - -2.1 4,331,646 - ABIE41_RS21060 0.27 +1.8 4,331,735 + ABIE41_RS21060 0.37 -0.1 4,331,736 - ABIE41_RS21060 0.37 +0.1 4,331,790 - ABIE41_RS21060 0.44 +0.6 4,331,937 - ABIE41_RS21060 0.60 +0.0 4,331,937 - ABIE41_RS21060 0.60 -0.7 4,331,937 - ABIE41_RS21060 0.60 +0.1 4,331,937 - ABIE41_RS21060 0.60 -1.5 4,332,101 + ABIE41_RS21060 0.79 +0.1 4,332,482 - ABIE41_RS21065 0.12 +0.2 4,332,482 - ABIE41_RS21065 0.12 -0.5 4,332,620 + ABIE41_RS21065 0.21 -0.7 4,332,621 - ABIE41_RS21065 0.21 -0.2 4,332,621 - ABIE41_RS21065 0.21 +1.2 4,332,621 - ABIE41_RS21065 0.21 -1.2 4,332,624 - ABIE41_RS21065 0.21 +0.4 4,332,624 - ABIE41_RS21065 0.21 -1.8 4,332,624 - ABIE41_RS21065 0.21 -2.5 4,333,051 - ABIE41_RS21065 0.49 +0.2
Or see this region's nucleotide sequence