Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17800 and ABIE41_RS17805 are separated by 106 nucleotides ABIE41_RS17805 and ABIE41_RS17810 are separated by 43 nucleotides ABIE41_RS17810 and ABIE41_RS17815 are separated by 163 nucleotides
ABIE41_RS17800: ABIE41_RS17800 - DNA repair protein RadA, at 3,666,473 to 3,667,870
_RS17800
ABIE41_RS17805: ABIE41_RS17805 - CvpA family protein, at 3,667,977 to 3,668,660
_RS17805
ABIE41_RS17810: ABIE41_RS17810 - amidophosphoribosyltransferase, at 3,668,704 to 3,670,191
_RS17810
ABIE41_RS17815: ABIE41_RS17815 - SDR family NAD(P)-dependent oxidoreductase, at 3,670,355 to 3,671,095
_RS17815
Position (kb)
3668
3669
3670
3671 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3667.883 kb on - strand at 3667.908 kb on - strand at 3667.909 kb on + strand at 3668.145 kb on + strand, within ABIE41_RS17805 at 3668.334 kb on + strand, within ABIE41_RS17805 at 3668.617 kb on + strand at 3669.146 kb on - strand, within ABIE41_RS17810 at 3669.254 kb on - strand, within ABIE41_RS17810 at 3669.270 kb on + strand, within ABIE41_RS17810 at 3669.270 kb on + strand, within ABIE41_RS17810 at 3669.273 kb on + strand, within ABIE41_RS17810 at 3669.499 kb on + strand, within ABIE41_RS17810 at 3669.499 kb on + strand, within ABIE41_RS17810 at 3669.499 kb on + strand, within ABIE41_RS17810 at 3669.500 kb on - strand, within ABIE41_RS17810 at 3669.500 kb on - strand, within ABIE41_RS17810 at 3669.505 kb on + strand, within ABIE41_RS17810 at 3669.548 kb on - strand, within ABIE41_RS17810 at 3669.548 kb on - strand, within ABIE41_RS17810 at 3669.703 kb on + strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.704 kb on - strand, within ABIE41_RS17810 at 3669.931 kb on + strand, within ABIE41_RS17810 at 3670.046 kb on - strand at 3670.770 kb on + strand, within ABIE41_RS17815 at 3670.823 kb on + strand, within ABIE41_RS17815 at 3670.823 kb on + strand, within ABIE41_RS17815 at 3670.824 kb on - strand, within ABIE41_RS17815 at 3670.866 kb on - strand, within ABIE41_RS17815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 3,667,883 - -0.3 3,667,908 - -1.1 3,667,909 + -0.2 3,668,145 + ABIE41_RS17805 0.25 -1.6 3,668,334 + ABIE41_RS17805 0.52 +1.9 3,668,617 + +1.4 3,669,146 - ABIE41_RS17810 0.30 -2.5 3,669,254 - ABIE41_RS17810 0.37 -3.9 3,669,270 + ABIE41_RS17810 0.38 -2.6 3,669,270 + ABIE41_RS17810 0.38 -0.1 3,669,273 + ABIE41_RS17810 0.38 -0.5 3,669,499 + ABIE41_RS17810 0.53 -3.4 3,669,499 + ABIE41_RS17810 0.53 -2.6 3,669,499 + ABIE41_RS17810 0.53 -1.0 3,669,500 - ABIE41_RS17810 0.53 -3.4 3,669,500 - ABIE41_RS17810 0.53 -3.4 3,669,505 + ABIE41_RS17810 0.54 -4.2 3,669,548 - ABIE41_RS17810 0.57 -3.6 3,669,548 - ABIE41_RS17810 0.57 -0.3 3,669,703 + ABIE41_RS17810 0.67 -1.0 3,669,704 - ABIE41_RS17810 0.67 -3.1 3,669,704 - ABIE41_RS17810 0.67 -0.1 3,669,704 - ABIE41_RS17810 0.67 -3.5 3,669,704 - ABIE41_RS17810 0.67 -4.0 3,669,704 - ABIE41_RS17810 0.67 -3.0 3,669,704 - ABIE41_RS17810 0.67 -0.1 3,669,931 + ABIE41_RS17810 0.82 -2.5 3,670,046 - -3.4 3,670,770 + ABIE41_RS17815 0.56 -0.2 3,670,823 + ABIE41_RS17815 0.63 -1.1 3,670,823 + ABIE41_RS17815 0.63 +1.1 3,670,824 - ABIE41_RS17815 0.63 +0.1 3,670,866 - ABIE41_RS17815 0.69 +0.6
Or see this region's nucleotide sequence