Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17810

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17800 and ABIE41_RS17805 are separated by 106 nucleotidesABIE41_RS17805 and ABIE41_RS17810 are separated by 43 nucleotidesABIE41_RS17810 and ABIE41_RS17815 are separated by 163 nucleotides ABIE41_RS17800: ABIE41_RS17800 - DNA repair protein RadA, at 3,666,473 to 3,667,870 _RS17800 ABIE41_RS17805: ABIE41_RS17805 - CvpA family protein, at 3,667,977 to 3,668,660 _RS17805 ABIE41_RS17810: ABIE41_RS17810 - amidophosphoribosyltransferase, at 3,668,704 to 3,670,191 _RS17810 ABIE41_RS17815: ABIE41_RS17815 - SDR family NAD(P)-dependent oxidoreductase, at 3,670,355 to 3,671,095 _RS17815 Position (kb) 3668 3669 3670 3671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3667.883 kb on - strandat 3667.908 kb on - strandat 3667.909 kb on + strandat 3668.145 kb on + strand, within ABIE41_RS17805at 3668.334 kb on + strand, within ABIE41_RS17805at 3668.617 kb on + strandat 3669.146 kb on - strand, within ABIE41_RS17810at 3669.254 kb on - strand, within ABIE41_RS17810at 3669.270 kb on + strand, within ABIE41_RS17810at 3669.270 kb on + strand, within ABIE41_RS17810at 3669.273 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.499 kb on + strand, within ABIE41_RS17810at 3669.500 kb on - strand, within ABIE41_RS17810at 3669.500 kb on - strand, within ABIE41_RS17810at 3669.505 kb on + strand, within ABIE41_RS17810at 3669.548 kb on - strand, within ABIE41_RS17810at 3669.548 kb on - strand, within ABIE41_RS17810at 3669.703 kb on + strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.704 kb on - strand, within ABIE41_RS17810at 3669.931 kb on + strand, within ABIE41_RS17810at 3670.046 kb on - strandat 3670.770 kb on + strand, within ABIE41_RS17815at 3670.823 kb on + strand, within ABIE41_RS17815at 3670.823 kb on + strand, within ABIE41_RS17815at 3670.824 kb on - strand, within ABIE41_RS17815at 3670.866 kb on - strand, within ABIE41_RS17815

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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3,667,883 - -0.3
3,667,908 - -1.1
3,667,909 + -0.2
3,668,145 + ABIE41_RS17805 0.25 -1.6
3,668,334 + ABIE41_RS17805 0.52 +1.9
3,668,617 + +1.4
3,669,146 - ABIE41_RS17810 0.30 -2.5
3,669,254 - ABIE41_RS17810 0.37 -3.9
3,669,270 + ABIE41_RS17810 0.38 -2.6
3,669,270 + ABIE41_RS17810 0.38 -0.1
3,669,273 + ABIE41_RS17810 0.38 -0.5
3,669,499 + ABIE41_RS17810 0.53 -3.4
3,669,499 + ABIE41_RS17810 0.53 -2.6
3,669,499 + ABIE41_RS17810 0.53 -1.0
3,669,500 - ABIE41_RS17810 0.53 -3.4
3,669,500 - ABIE41_RS17810 0.53 -3.4
3,669,505 + ABIE41_RS17810 0.54 -4.2
3,669,548 - ABIE41_RS17810 0.57 -3.6
3,669,548 - ABIE41_RS17810 0.57 -0.3
3,669,703 + ABIE41_RS17810 0.67 -1.0
3,669,704 - ABIE41_RS17810 0.67 -3.1
3,669,704 - ABIE41_RS17810 0.67 -0.1
3,669,704 - ABIE41_RS17810 0.67 -3.5
3,669,704 - ABIE41_RS17810 0.67 -4.0
3,669,704 - ABIE41_RS17810 0.67 -3.0
3,669,704 - ABIE41_RS17810 0.67 -0.1
3,669,931 + ABIE41_RS17810 0.82 -2.5
3,670,046 - -3.4
3,670,770 + ABIE41_RS17815 0.56 -0.2
3,670,823 + ABIE41_RS17815 0.63 -1.1
3,670,823 + ABIE41_RS17815 0.63 +1.1
3,670,824 - ABIE41_RS17815 0.63 +0.1
3,670,866 - ABIE41_RS17815 0.69 +0.6

Or see this region's nucleotide sequence