Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14660 and ABIE41_RS14665 are separated by 113 nucleotides ABIE41_RS14665 and ABIE41_RS14670 are separated by 88 nucleotides ABIE41_RS14670 and ABIE41_RS14675 are separated by 114 nucleotides ABIE41_RS14675 and ABIE41_RS14680 are separated by 173 nucleotides
ABIE41_RS14660: ABIE41_RS14660 - 30S ribosomal protein S13, at 3,001,127 to 3,001,495
_RS14660
ABIE41_RS14665: ABIE41_RS14665 - 30S ribosomal protein S11, at 3,001,609 to 3,001,998
_RS14665
ABIE41_RS14670: ABIE41_RS14670 - DNA-directed RNA polymerase subunit alpha, at 3,002,087 to 3,003,103
_RS14670
ABIE41_RS14675: ABIE41_RS14675 - 50S ribosomal protein L17, at 3,003,218 to 3,003,634
_RS14675
ABIE41_RS14680: ABIE41_RS14680 - tripartite tricarboxylate transporter substrate-binding protein, at 3,003,808 to 3,004,773
_RS14680
Position (kb) 3002
3003
3004 Strain fitness (log2 ratio) -1
0
1 at 3003.098 kb on + strand at 3003.749 kb on + strand at 3003.749 kb on + strand at 3003.750 kb on - strand at 3003.750 kb on - strand at 3004.069 kb on + strand, within ABIE41_RS14680 at 3004.070 kb on - strand, within ABIE41_RS14680
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 3,003,098 + -1.2 3,003,749 + -0.9 3,003,749 + -1.3 3,003,750 - +1.3 3,003,750 - -0.9 3,004,069 + ABIE41_RS14680 0.27 +0.4 3,004,070 - ABIE41_RS14680 0.27 -1.6
Or see this region's nucleotide sequence