Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14045 and ABIE41_RS14050 are separated by 65 nucleotides ABIE41_RS14050 and ABIE41_RS14055 are separated by 107 nucleotides ABIE41_RS14055 and ABIE41_RS14060 are separated by 42 nucleotides ABIE41_RS14060 and ABIE41_RS14065 are separated by 183 nucleotides
ABIE41_RS14045: ABIE41_RS14045 - phosphoribosyl-AMP cyclohydrolase, at 2,881,755 to 2,882,156
_RS14045
ABIE41_RS14050: ABIE41_RS14050 - TetR/AcrR family transcriptional regulator, at 2,882,222 to 2,882,746
_RS14050
ABIE41_RS14055: ABIE41_RS14055 - SDR family oxidoreductase, at 2,882,854 to 2,883,621
_RS14055
ABIE41_RS14060: ABIE41_RS14060 - GTP cyclohydrolase I FolE, at 2,883,664 to 2,884,305
_RS14060
ABIE41_RS14065: ABIE41_RS14065 - iron-sulfur cluster assembly scaffold protein, at 2,884,489 to 2,884,938
_RS14065
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2881.970 kb on - strand, within ABIE41_RS14045 at 2882.018 kb on + strand, within ABIE41_RS14045 at 2882.018 kb on + strand, within ABIE41_RS14045 at 2882.018 kb on + strand, within ABIE41_RS14045 at 2882.233 kb on + strand at 2882.234 kb on - strand at 2882.327 kb on - strand, within ABIE41_RS14050 at 2882.364 kb on + strand, within ABIE41_RS14050 at 2882.364 kb on + strand, within ABIE41_RS14050 at 2882.365 kb on - strand, within ABIE41_RS14050 at 2882.566 kb on + strand, within ABIE41_RS14050 at 2882.566 kb on + strand, within ABIE41_RS14050 at 2882.566 kb on + strand, within ABIE41_RS14050 at 2882.566 kb on + strand, within ABIE41_RS14050 at 2882.567 kb on - strand, within ABIE41_RS14050 at 2882.567 kb on - strand, within ABIE41_RS14050 at 2882.569 kb on - strand, within ABIE41_RS14050 at 2882.569 kb on - strand, within ABIE41_RS14050 at 2882.569 kb on - strand, within ABIE41_RS14050 at 2882.569 kb on - strand, within ABIE41_RS14050 at 2882.616 kb on + strand, within ABIE41_RS14050 at 2882.617 kb on - strand, within ABIE41_RS14050 at 2882.617 kb on - strand, within ABIE41_RS14050 at 2882.768 kb on + strand at 2882.769 kb on - strand at 2882.772 kb on + strand at 2882.773 kb on - strand at 2883.040 kb on + strand, within ABIE41_RS14055 at 2883.099 kb on - strand, within ABIE41_RS14055 at 2883.124 kb on + strand, within ABIE41_RS14055 at 2883.199 kb on + strand, within ABIE41_RS14055 at 2883.199 kb on + strand, within ABIE41_RS14055 at 2883.200 kb on - strand, within ABIE41_RS14055 at 2883.428 kb on - strand, within ABIE41_RS14055 at 2883.619 kb on + strand at 2883.620 kb on - strand at 2883.620 kb on - strand at 2884.321 kb on - strand at 2884.334 kb on + strand at 2884.335 kb on - strand at 2884.335 kb on - strand at 2884.335 kb on - strand at 2884.441 kb on + strand at 2884.441 kb on + strand at 2884.442 kb on - strand at 2884.443 kb on + strand at 2884.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 2,881,970 - ABIE41_RS14045 0.53 -0.2 2,882,018 + ABIE41_RS14045 0.65 -1.1 2,882,018 + ABIE41_RS14045 0.65 -3.2 2,882,018 + ABIE41_RS14045 0.65 -1.9 2,882,233 + +0.3 2,882,234 - -0.1 2,882,327 - ABIE41_RS14050 0.20 +0.6 2,882,364 + ABIE41_RS14050 0.27 -0.3 2,882,364 + ABIE41_RS14050 0.27 -0.5 2,882,365 - ABIE41_RS14050 0.27 +0.8 2,882,566 + ABIE41_RS14050 0.66 -0.4 2,882,566 + ABIE41_RS14050 0.66 +0.1 2,882,566 + ABIE41_RS14050 0.66 -0.3 2,882,566 + ABIE41_RS14050 0.66 -0.5 2,882,567 - ABIE41_RS14050 0.66 +1.2 2,882,567 - ABIE41_RS14050 0.66 +0.2 2,882,569 - ABIE41_RS14050 0.66 -0.5 2,882,569 - ABIE41_RS14050 0.66 +0.2 2,882,569 - ABIE41_RS14050 0.66 -0.5 2,882,569 - ABIE41_RS14050 0.66 +0.5 2,882,616 + ABIE41_RS14050 0.75 +1.3 2,882,617 - ABIE41_RS14050 0.75 -0.1 2,882,617 - ABIE41_RS14050 0.75 -0.8 2,882,768 + -0.6 2,882,769 - -3.1 2,882,772 + -0.2 2,882,773 - -0.3 2,883,040 + ABIE41_RS14055 0.24 +0.5 2,883,099 - ABIE41_RS14055 0.32 +0.2 2,883,124 + ABIE41_RS14055 0.35 -1.4 2,883,199 + ABIE41_RS14055 0.45 -1.6 2,883,199 + ABIE41_RS14055 0.45 +0.2 2,883,200 - ABIE41_RS14055 0.45 +0.5 2,883,428 - ABIE41_RS14055 0.75 +0.5 2,883,619 + +2.0 2,883,620 - +0.1 2,883,620 - -1.0 2,884,321 - -0.1 2,884,334 + +0.2 2,884,335 - -0.5 2,884,335 - -0.2 2,884,335 - -0.6 2,884,441 + -0.4 2,884,441 + -2.2 2,884,442 - +1.2 2,884,443 + +1.4 2,884,443 + +1.1
Or see this region's nucleotide sequence