Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14055

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14045 and ABIE41_RS14050 are separated by 65 nucleotidesABIE41_RS14050 and ABIE41_RS14055 are separated by 107 nucleotidesABIE41_RS14055 and ABIE41_RS14060 are separated by 42 nucleotidesABIE41_RS14060 and ABIE41_RS14065 are separated by 183 nucleotides ABIE41_RS14045: ABIE41_RS14045 - phosphoribosyl-AMP cyclohydrolase, at 2,881,755 to 2,882,156 _RS14045 ABIE41_RS14050: ABIE41_RS14050 - TetR/AcrR family transcriptional regulator, at 2,882,222 to 2,882,746 _RS14050 ABIE41_RS14055: ABIE41_RS14055 - SDR family oxidoreductase, at 2,882,854 to 2,883,621 _RS14055 ABIE41_RS14060: ABIE41_RS14060 - GTP cyclohydrolase I FolE, at 2,883,664 to 2,884,305 _RS14060 ABIE41_RS14065: ABIE41_RS14065 - iron-sulfur cluster assembly scaffold protein, at 2,884,489 to 2,884,938 _RS14065 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2881.970 kb on - strand, within ABIE41_RS14045at 2882.018 kb on + strand, within ABIE41_RS14045at 2882.018 kb on + strand, within ABIE41_RS14045at 2882.018 kb on + strand, within ABIE41_RS14045at 2882.233 kb on + strandat 2882.234 kb on - strandat 2882.327 kb on - strand, within ABIE41_RS14050at 2882.364 kb on + strand, within ABIE41_RS14050at 2882.364 kb on + strand, within ABIE41_RS14050at 2882.365 kb on - strand, within ABIE41_RS14050at 2882.566 kb on + strand, within ABIE41_RS14050at 2882.566 kb on + strand, within ABIE41_RS14050at 2882.566 kb on + strand, within ABIE41_RS14050at 2882.566 kb on + strand, within ABIE41_RS14050at 2882.567 kb on - strand, within ABIE41_RS14050at 2882.567 kb on - strand, within ABIE41_RS14050at 2882.569 kb on - strand, within ABIE41_RS14050at 2882.569 kb on - strand, within ABIE41_RS14050at 2882.569 kb on - strand, within ABIE41_RS14050at 2882.569 kb on - strand, within ABIE41_RS14050at 2882.616 kb on + strand, within ABIE41_RS14050at 2882.617 kb on - strand, within ABIE41_RS14050at 2882.617 kb on - strand, within ABIE41_RS14050at 2882.768 kb on + strandat 2882.769 kb on - strandat 2882.772 kb on + strandat 2882.773 kb on - strandat 2883.040 kb on + strand, within ABIE41_RS14055at 2883.099 kb on - strand, within ABIE41_RS14055at 2883.124 kb on + strand, within ABIE41_RS14055at 2883.199 kb on + strand, within ABIE41_RS14055at 2883.199 kb on + strand, within ABIE41_RS14055at 2883.200 kb on - strand, within ABIE41_RS14055at 2883.428 kb on - strand, within ABIE41_RS14055at 2883.619 kb on + strandat 2883.620 kb on - strandat 2883.620 kb on - strandat 2884.321 kb on - strandat 2884.334 kb on + strandat 2884.335 kb on - strandat 2884.335 kb on - strandat 2884.335 kb on - strandat 2884.441 kb on + strandat 2884.441 kb on + strandat 2884.442 kb on - strandat 2884.443 kb on + strandat 2884.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,881,970 - ABIE41_RS14045 0.53 -0.2
2,882,018 + ABIE41_RS14045 0.65 -1.1
2,882,018 + ABIE41_RS14045 0.65 -3.2
2,882,018 + ABIE41_RS14045 0.65 -1.9
2,882,233 + +0.3
2,882,234 - -0.1
2,882,327 - ABIE41_RS14050 0.20 +0.6
2,882,364 + ABIE41_RS14050 0.27 -0.3
2,882,364 + ABIE41_RS14050 0.27 -0.5
2,882,365 - ABIE41_RS14050 0.27 +0.8
2,882,566 + ABIE41_RS14050 0.66 -0.4
2,882,566 + ABIE41_RS14050 0.66 +0.1
2,882,566 + ABIE41_RS14050 0.66 -0.3
2,882,566 + ABIE41_RS14050 0.66 -0.5
2,882,567 - ABIE41_RS14050 0.66 +1.2
2,882,567 - ABIE41_RS14050 0.66 +0.2
2,882,569 - ABIE41_RS14050 0.66 -0.5
2,882,569 - ABIE41_RS14050 0.66 +0.2
2,882,569 - ABIE41_RS14050 0.66 -0.5
2,882,569 - ABIE41_RS14050 0.66 +0.5
2,882,616 + ABIE41_RS14050 0.75 +1.3
2,882,617 - ABIE41_RS14050 0.75 -0.1
2,882,617 - ABIE41_RS14050 0.75 -0.8
2,882,768 + -0.6
2,882,769 - -3.1
2,882,772 + -0.2
2,882,773 - -0.3
2,883,040 + ABIE41_RS14055 0.24 +0.5
2,883,099 - ABIE41_RS14055 0.32 +0.2
2,883,124 + ABIE41_RS14055 0.35 -1.4
2,883,199 + ABIE41_RS14055 0.45 -1.6
2,883,199 + ABIE41_RS14055 0.45 +0.2
2,883,200 - ABIE41_RS14055 0.45 +0.5
2,883,428 - ABIE41_RS14055 0.75 +0.5
2,883,619 + +2.0
2,883,620 - +0.1
2,883,620 - -1.0
2,884,321 - -0.1
2,884,334 + +0.2
2,884,335 - -0.5
2,884,335 - -0.2
2,884,335 - -0.6
2,884,441 + -0.4
2,884,441 + -2.2
2,884,442 - +1.2
2,884,443 + +1.4
2,884,443 + +1.1

Or see this region's nucleotide sequence