Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10525

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS10520 and ABIE41_RS10525 are separated by 0 nucleotidesABIE41_RS10525 and ABIE41_RS10530 are separated by 96 nucleotidesABIE41_RS10530 and ABIE41_RS10535 overlap by 4 nucleotides ABIE41_RS10520: ABIE41_RS10520 - methyl-accepting chemotaxis protein, at 2,169,709 to 2,171,262 _RS10520 ABIE41_RS10525: ABIE41_RS10525 - NAD-dependent epimerase, at 2,171,263 to 2,172,291 _RS10525 ABIE41_RS10530: ABIE41_RS10530 - cbb3-type cytochrome oxidase assembly protein CcoS, at 2,172,388 to 2,172,603 _RS10530 ABIE41_RS10535: ABIE41_RS10535 - heavy metal translocating P-type ATPase, at 2,172,600 to 2,174,807 _RS10535 Position (kb) 2171 2172 2173Strain fitness (log2 ratio) -3 -2 -1 0 1at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.288 kb on + strand, within ABIE41_RS10520at 2170.289 kb on - strand, within ABIE41_RS10520at 2170.500 kb on + strand, within ABIE41_RS10520at 2170.500 kb on + strand, within ABIE41_RS10520at 2170.500 kb on + strand, within ABIE41_RS10520at 2170.501 kb on - strand, within ABIE41_RS10520at 2170.501 kb on - strand, within ABIE41_RS10520at 2171.064 kb on + strand, within ABIE41_RS10520at 2171.065 kb on - strand, within ABIE41_RS10520at 2171.295 kb on - strandat 2171.382 kb on - strand, within ABIE41_RS10525at 2171.504 kb on + strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.505 kb on - strand, within ABIE41_RS10525at 2171.615 kb on + strand, within ABIE41_RS10525at 2171.616 kb on - strand, within ABIE41_RS10525at 2171.616 kb on - strand, within ABIE41_RS10525at 2171.648 kb on + strand, within ABIE41_RS10525at 2171.765 kb on + strand, within ABIE41_RS10525at 2171.777 kb on + strand, within ABIE41_RS10525at 2171.903 kb on + strand, within ABIE41_RS10525at 2171.903 kb on + strand, within ABIE41_RS10525at 2171.904 kb on - strand, within ABIE41_RS10525at 2172.080 kb on + strand, within ABIE41_RS10525at 2172.080 kb on + strand, within ABIE41_RS10525at 2172.163 kb on + strand, within ABIE41_RS10525at 2172.164 kb on + strand, within ABIE41_RS10525at 2172.513 kb on - strand, within ABIE41_RS10530at 2172.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,170,288 + ABIE41_RS10520 0.37 +0.5
2,170,288 + ABIE41_RS10520 0.37 +0.8
2,170,288 + ABIE41_RS10520 0.37 +1.7
2,170,288 + ABIE41_RS10520 0.37 -0.6
2,170,288 + ABIE41_RS10520 0.37 +0.2
2,170,288 + ABIE41_RS10520 0.37 -0.0
2,170,289 - ABIE41_RS10520 0.37 -1.6
2,170,500 + ABIE41_RS10520 0.51 -0.6
2,170,500 + ABIE41_RS10520 0.51 -1.3
2,170,500 + ABIE41_RS10520 0.51 -3.1
2,170,501 - ABIE41_RS10520 0.51 +0.2
2,170,501 - ABIE41_RS10520 0.51 -0.2
2,171,064 + ABIE41_RS10520 0.87 +0.1
2,171,065 - ABIE41_RS10520 0.87 +0.6
2,171,295 - -2.4
2,171,382 - ABIE41_RS10525 0.12 -1.3
2,171,504 + ABIE41_RS10525 0.23 -0.8
2,171,505 - ABIE41_RS10525 0.24 -1.4
2,171,505 - ABIE41_RS10525 0.24 -1.1
2,171,505 - ABIE41_RS10525 0.24 -2.7
2,171,615 + ABIE41_RS10525 0.34 -2.6
2,171,616 - ABIE41_RS10525 0.34 -2.3
2,171,616 - ABIE41_RS10525 0.34 -0.8
2,171,648 + ABIE41_RS10525 0.37 -2.8
2,171,765 + ABIE41_RS10525 0.49 -3.5
2,171,777 + ABIE41_RS10525 0.50 -2.6
2,171,903 + ABIE41_RS10525 0.62 -1.0
2,171,903 + ABIE41_RS10525 0.62 -2.2
2,171,904 - ABIE41_RS10525 0.62 -1.8
2,172,080 + ABIE41_RS10525 0.79 -1.6
2,172,080 + ABIE41_RS10525 0.79 -2.0
2,172,163 + ABIE41_RS10525 0.87 -3.3
2,172,164 + ABIE41_RS10525 0.88 +1.7
2,172,513 - ABIE41_RS10530 0.58 +0.4
2,172,752 - -0.7

Or see this region's nucleotide sequence